Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq343 113 3e-20 seq394 82.4 5e-11 >seq343 Length=430003 Score = 113 bits (124), Expect = 3e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| ||||| || | || |||| ||||| || |||||||||||||||||| || || Sbjct 48392 TCCACCGCGGAGACGCAATACCAAATGTAATGTGGATTCTTTCTGTATGTTGTAATCAGA 48451 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || | ||| |||| |||||||| || || || || || | ||||| ||||| || Sbjct 48452 CAACGTGCGGCCGTCTTCCAACTGTTTTCCAGCAAAGATCAAACGCTGTTGGTCTGGAGG 48511 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGA 34340 | | |||||||| || ||||||||| | | | || | ||| | |||||| | Sbjct 48512 AATACCTTCCTTGTCTTGGAT-TTTTGCTTTAACGTTTTCGATAGTATCCGACGATTCTA 48570 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | |||| ||||||||||| ||||| | ||| || ||||| || ||||| Sbjct 48571 CTTCCAAAGTGATGGTTTTACCGGTCAAAGTCTTAACAAATATTTGCAT 48619 Score = 86.0 bits (94), Expect = 4e-12 Identities = 132/186 (71%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 34205 TGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGC 34264 ||||||||||| || |||| ||| | || ||||| || ||||| |||||||| | Sbjct 48207 TGTATGTTGTAATCAGACAATGTGCGGCCATCTTCCAATTGTTTGCCAGCGAAAATTAAA 48266 Query 34265 CGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTAT 34323 ||||| ||||| || | | |||||||| || ||||||||| | | | || Sbjct 48267 CGCTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGGAT-TTTTGCTTTAACGTTTTCGAT 48325 Query 34324 CGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGAT 34383 | ||| | || ||| || |||| ||||||||||| || || | |||||| ||||| || Sbjct 48326 AGTATCCGACGGTTCTACTTCCAAAGTGATGGTTTTTCCAGTCAAAGTTTTAACAAATAT 48385 Query 34384 CTGCAT 34389 ||||| Sbjct 48386 TTGCAT 48391 >seq394 Length=301216 Score = 82.4 bits (90), Expect = 5e-11 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | | ||||| || | ||| ||| || || || || ||||| ||| Sbjct 217020 CCTCCGCGAAGACGTAACACCAAATGGAGCGTAGATTCCTTTTGGATATTATAGTCTGAC 217079 Query 34223 A-GCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 | | || ||| | || |||| |||||| || || ||||| | ||||| || || || Sbjct 217080 AAGGTG-CGGCCATCTTCCAGCTGCTTACCGGCAAAAATTAAGCGCTGTTGATCTGGAGG 217138 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTA--GATCGGCTATCGAATCGGTCGATTCG 34339 | || || ||||| || |||||||||| | || | || | ||| | | ||| Sbjct 217139 AATGCCTTCTTTGTCTTGAAT-TTTTGCTTTAACGTTCT-CAATAGTATCCGAGGGTTCT 217196 Query 34340 ACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || | ||||||||||| || || | |||||| |||||||||||||| Sbjct 217197 ACTTCTAAAGTGATGGTTTTACCTGTCAAAGTTTTTACAAAGATCTGCAT 217246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323056541610560