Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq158 244 1e-59 >seq158 Length=613782 Score = 244 bits (270), Expect = 1e-59 Identities = 484/707 (68%), Gaps = 12/707 (2%) Strand=Plus/Plus Query 16069 ATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTAAC 16128 ||| || ||| |||||||||| | ||| || | |||||| || ||||| | || Sbjct 555579 ATCGGCAACATATTCTATATATTTACACATACTTTCGCTGTTCATGCCAATTAAGTCGAC 555638 Query 16129 AGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTATATCTCT 16188 || | || ||||| ||||| | |||||| || ||||| || || | ||||| || | Sbjct 555639 TGGTAAGGCCTCTGTCAAAAACTCTTTTTCAATTTTAACGGCATCTGTTATTATTTC-CA 555697 Query 16189 TACTACACTATTTAA-CGGAGGGTTTAATAAGTGTTTAAACATTA-TACAAGCAAAATCA 16246 | | | | ||| ||| | || || ||||||||||||| ||| ||||| ||| Sbjct 555698 AAATCCGTTCTTTGCTCGGTTTTTGTATCAAATGTTTAAACATTAATACC-GCAAATTCA 555756 Query 16247 CAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGT 16306 || ||||| ||||| || | ||| | || || || || || | ||||||||||| | Sbjct 555757 CAGTGCAAGCCTTCATCGCGTGATATCATTTCATTAGAGAACGTTAAACCTGGCATTATT 555816 Query 16307 CCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACT 16366 || ||||| || | ||||||||| | || || ||| ||||||||||||||| || Sbjct 555817 CCACGTTTCTTTAGCCAAAATATCGAAGCGAAGCTCCCACTAAAGAATATACCTTCGACG 555876 Query 16367 GCGGCAAATGCAACCAATCGCTCACCGTACGTT--CTAtttttactttctatccattttt 16424 || || || || | | || |||||| | | | | | | | |||||| | Sbjct 555877 GCAGCGAAAGCTATAACACGTTCACCGAAATTAGCCGAATGCGA--TGATATCCAAGCTA 555934 Query 16425 tagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATAAATAAt 16484 ||||| | || || | ||||| | ||| |||| || |||||||||| ||| | Sbjct 555935 GTGCCCATTCCGCCTTCTTCTTAACCAATGGCATTGTCTCAATGGCATTAAATAGATATT 555994 Query 16485 ttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAA 16544 |||||||| |||| ||||| || || || ||||||||||||||||| || || | Sbjct 555995 CCTTTTCTTTCTCATCTCTGATATATGTTTCGATAAGTAAACTATACATTTCCGAGTGTA 556054 Query 16545 TATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCAG 16604 ||| ||||| || || ||||| ||||||||||| | ||||||| |||||| || || Sbjct 556055 CATTTTCCATGGCAATTTGAAACCCATAAAAGCAACGTGCTTCGGTTATTTGAACCTCTT 556114 Query 16605 AGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAA 16664 | |||| | ||| |||| || || ||||| || |||||| || |||||||| || | Sbjct 556115 GGGAAAATCGTTCCACTAAATTCTCATTAACAATACCATCGGATGCCGCAAAAAAAGCCA 556174 Query 16665 GTATGTGTTTAATAAAAtttttttCGTTAT--CTGAAAGTTTTAACCAGTCAGAAAAATC 16722 | |||| |||||||| |||| || || || || ||| || | ||| Sbjct 556175 AAACGTGTGAAATAAAATGACGTTCGCCATTACTTAACCGATT--CCAATCGTCGATATC 556232 Query 16723 TTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCT 16769 ||| || | || || |||||| ||||||||||||| || | |||| Sbjct 556233 TTTAGAGAGGTCAACTTCTTCTGCAGTCCAAAAAGAGGCTTCCGCCT 556279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462489302223600