Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq343 82.4 6e-11 seq110 82.4 6e-11 >seq343 Length=430003 Score = 82.4 bits (90), Expect = 6e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||| | ||| | || ||||| |||| || |||||||||||| ||||| ||| | Sbjct 54242 CCACCGCGCAAACGTAGGACCAAATGCAAGGTTGACTCCTTCTGAATATTGTAATCGGAC 54301 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 | ||| |||| ||||||||||| ||||| || ||||| || ||||| || || || Sbjct 54302 AAGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCAAAAATCAAACGTTGTTGATCTGGGGGG 54361 Query 45230 ACACCCTCCTTGTCCGCAATTTT 45252 | || ||||| || |||||| Sbjct 54362 ATTCCTTCCTTATCTTGAATTTT 54384 >seq110 Length=875010 Score = 82.4 bits (90), Expect = 6e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 45127 TACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGT-CGTTCAGTTGGCGATCGTCGT 45185 ||||||||||| || |||||| || ||||| || | || | | | || | || | Sbjct 86414 TACCAAGTGCAAGGTCGACTCCTTTTGTATGTTATAATCCGATAAAGT-CCGCCCATCTT 86356 Query 45186 CCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCG 45245 ||| |||||| || ||||| ||||| || ||||| || ||||| | || || || ||| Sbjct 86355 CCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCCT 86296 Query 45246 CAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCT 45305 |||||| ||| || | | |||| | ||| || |||| ||||| || | Sbjct 86295 GAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATAGTTT 86236 Query 45306 TGCCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 |||| || ||||| || ||||| |||||||| || Sbjct 86235 TGCCAGTAAGAGTTTTAACAAAAATTTGCATTTT 86202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395056296392446