Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq158 284 1e-71 >seq158 Length=613782 Score = 284 bits (314), Expect = 1e-71 Identities = 507/734 (69%), Gaps = 6/734 (1%) Strand=Plus/Plus Query 13996 TGACATAAAC--ACTTTATCACAAC-CTAGTTCTAATAGTAATCTATCCGCAATGAACTC 14052 ||| |||||| || || || || | ||||||||||||| || | ||| |||| | || Sbjct 555535 TGAAATAAACTTACCTT-TCCCACCTCTAGTTCTAATAGCAAACGATCGGCAACATATTC 555593 Query 14053 AATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTGGT 14112 ||||||| | |||| || | ||||| || |||| | || || | | || Sbjct 555594 TATATATTTACACATACTTTCGCTGTTCATGCCAATTAAGTCGACTGGTAAGGCCTCTGT 555653 Query 14113 TAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCGTAATAATTTCATTAGA 14172 ||||| |||||||| || || || || |||| || | ||| ||| || Sbjct 555654 CAAAAACTCTTTTTCAATTTTAACGGCATCTGTTATTATTTCCAAAATCCGTTCTTTGCT 555713 Query 14173 AGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATC 14232 || | | | | ||||||||| ||||| |||||| ||||| || | ||| ||||| Sbjct 555714 CGGTTTTTGTATCAAATGTTTAAACATTAATACCGCAAATTCACAGTGCAAGCCTTCATC 555773 Query 14233 TCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCA 14292 | || | ||| || || || ||||| |||||||| | ||| ||||| |||| ||| Sbjct 555774 GCGTGATATCATTTCATTAGAGAACGTTAAACCTGGCATTATTCCACGTTTCTTTAGCCA 555833 Query 14293 AAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAA 14352 |||||| | |||||| || ||||||||| || || || ||||| || ||||| | Sbjct 555834 AAATATCGAAGCGAAGCTCCCACTAAAGAATATACCTTCGACGGCAGCGAAAGCTATAAC 555893 Query 14353 TCGTTCTCC-AAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAttttt 14411 ||||| || ||| | | | | | |||||||| | |||||||| | || | Sbjct 555894 ACGTTCACCGAAATTAGCCGAATGCGAT-GATATCCAAGCTAGTGCCCATTCCGCCTTCT 555952 Query 14412 ttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATGTTCCTTCTCTTTAGTACTTG 14471 | |||| || |||||| ||||| |||||||||| || |||||| ||||| | | Sbjct 555953 TCTTAACCAATGGCATTGTCTCAATGGCATTAAATAGATATTCCTTTTCTTTCTCATCTC 556012 Query 14472 AAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCT 14531 || ||||| || |||||||| ||||||||||| ||||||| |||||||| || || | Sbjct 556013 TGATATATGTTTCGATAAGTAAACTATACATTTCCGAGTGTACATTTTCCATGGCAATTT 556072 Query 14532 GAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCA 14591 |||| |||||||| || | ||||| | ||| |||||| | |||||| ||| | | Sbjct 556073 GAAACCCATAAAAGCAACGTGCTTCGGTTATTTGAACCTCTTGGGAAAATCGTTCCACTA 556132 Query 14592 AATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGT 14651 |||| |||||||| |||||||| || |||||||| ||||| | || | |||||| | Sbjct 556133 AATTCTCATTAACAATACCATCGGATGCCGCAAAAAAAGCCAAAACGTGTGAAATAAAAT 556192 Query 14652 ATTGCTCTTCATTGCTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCAT 14711 | || |||| || | ||||||||| | | ||| ||||| || || ||||| | Sbjct 556193 GACGTTCGCCATTACTTAACCGATTCCAATCGTCGATATCTTTAGAGAGGTCAACTTCTT 556252 Query 14712 CAACTGTCCAAAAA 14725 | | ||||||||| Sbjct 556253 CTGCAGTCCAAAAA 556266 Score = 82.4 bits (90), Expect = 7e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 13904 ACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGT 13963 ||||| |||||||||||||| | ||||||||| |||||||| || ||||| || || | Sbjct 555379 ACGCCAATTTTTTGATATTCCCCAACTCTTTTCTCAAAGAAATTCGTTTTGCCATCAATA 555438 Query 13964 GATATATTTTCCATAAAATCAAATGGATTT 13993 ||| || | ||| || |||||||||||| Sbjct 555439 CTTATTTTATTCATGAATTCAAATGGATTT 555468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482321928889680