Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_003038.1 Length=212482 Score E Sequences producing significant alignments: (Bits) Value seq479 104 3e-17 >seq479 Length=526575 Score = 104 bits (114), Expect = 3e-17 Identities = 126/170 (74%), Gaps = 5/170 (3%) Strand=Plus/Minus Query 172381 ACCACTCTATCATATTATAGCCTAGAATTTCTAAATCTCCTCTTCTTGATTCAACACCTT 172440 ||||||| || ||||| || || | ||||||| || |||| ||| | |||| |||| Sbjct 245045 ACCACTCGATTATATTGTAACCCATTATTTCTAGGTCACCTCGTCTAGTCGCAACGCCTT 244986 Query 172441 GATGGCTATCTCTGCTTGTATATTTTAATGTACCATTATGTGCTTTTTTAGGATCTGGTT 172500 |||| ||||||| |||||||| || || |||||||| ||||||||||||||||| Sbjct 244985 GATGAGCATCTCTGGATGTATATTGTATAGTCCCATTATGCATTTTTTTAGGATCTGGTT 244926 Query 172501 GATAAATGT----TACTATAACGAGAACATAATCCAAAATCAACTAAATA 172546 | || | | | ||||| |||| ||||||| |||| |||||||| Sbjct 244925 TA-AAGTCTTTTGTCGTATAATGAGATGCTAATCCATAATCGACTAAATA 244877 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 679781038108320