Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq110 105 5e-18 seq343 100 2e-16 seq180 82.4 6e-11 >seq110 Length=875010 Score = 105 bits (116), Expect = 5e-18 Identities = 170/243 (70%), Gaps = 1/243 (0%) Strand=Plus/Minus Query 18095 TTAT-CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGT 18153 |||| || || || || | |||||||| ||| | || || || ||||| ||||| || | Sbjct 86436 TTATACCACCACGGAGACGAAGTACCAAGTGCAAGGTCGACTCCTTTTGTATGTTATAAT 86377 Query 18154 CGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCA 18213 | | | || | ||||||||||||||| || || | || | | ||||||||| Sbjct 86376 CCGATAAAGTCCGCCCATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTG 86317 Query 18214 CGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCT 18273 || | |||||| ||||| ||||| |||||| | | ||| |||||| |||| Sbjct 86316 GAGGAATGCCTTCTTTATCCTGAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCT 86257 Query 18274 CGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTAAAC 18333 | ||| | || || ||||||| || | ||||| ||||||||||||||||||| | Sbjct 86256 CAACTTCCAAAGTAATAGTTTTGCCAGTAAGAGTTTTAACAAAAATTTGCATTTTTATAT 86197 Query 18334 TCT 18336 ||| Sbjct 86196 TCT 86194 >seq343 Length=430003 Score = 100 bits (110), Expect = 2e-16 Identities = 154/218 (71%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| || ||||| |||||||| |||||||||||||| | | ||| | || |||| Sbjct 48639 ACCAAATGGAGTGTCGATTCTTTCTGAATGTTGTAGTCAGAGAGTGTGCGGCCATTTTCC 48698 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 || |||||||| ||| |||| | | ||||||||| || || || || ||||| | Sbjct 48699 AACTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGGGACACCCTCTTTATCTTGA 48758 Query 18237 ATTT--GTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTT 18294 |||| ||| || || | ||| ||| || ||||| || | |||||| ||| Sbjct 48759 ATTTTAGTT--TTAACATTCTCAATAGTATCGGATGGCTCAACCTCCAAGGTGATAGTTT 48816 Query 18295 TGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTAAA 18332 | || |||||||| || || || || |||||||| ||| Sbjct 48817 TTCCAGTCAATGTCTTCACGAATATCTGCATTTTAAAA 48854 >seq180 Length=539930 Score = 82.4 bits (90), Expect = 6e-11 Identities = 141/202 (70%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 18128 TGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCC 18187 ||| |||||||||||||| || || |||| || ||| || |||||||||||| || || Sbjct 121405 TGTGGATTCTTTTTGAATATTATAATCGGACAATGTGCGACCATCTTCCAATTGCTTTCC 121464 Query 18188 CGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGC-T 18246 || | || | || ||| || || || | || || || || ||| | | || | Sbjct 121465 AGCGAAAATCAATCGTTGCTGGTCGGGTGGAATTCCCTCTTTGTCCTGAATCT-TGGCTT 121523 Query 18247 TGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATG 18306 | || | | | | |||||| ||| ||| |||| |||||| | ||||| || | | Sbjct 121524 TTACATTTTCGATAGTGTCCGAGGGTTCGACCTCAAGAGTGATGGTCTTGCCCGTTAGGG 121583 Query 18307 TTTTTACAAAAATTTGCATTTT 18328 ||||||||||||| ||||| || Sbjct 121584 TTTTTACAAAAATCTGCATATT 121605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379325849100870