Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq343 96.9 3e-15 seq394 95.1 1e-14 >seq343 Length=430003 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24831 CATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG 24890 |||||| ||||||||||| || || ||||| ||||| || || | || || |||||| Sbjct 48620 CATGCAAATATTTGTTAAGACTTTGACCGGTAAAACCATCACTTTGGAAGTAGAATCGTC 48561 Query 24891 CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCA 24950 || | | | |||| ||||| | |||||| | || ||||| | || ||||| Sbjct 48560 GGATACTATCGAAAACGTTAAAGCAAAAATCCAAGACAAGGAAGGTATTCCTCCAGACCA 48501 Query 24951 GCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAG 25010 || ||||| || | ||| || ||||| ||||||| | || || ||||||| Sbjct 48500 ACAGCGTTTGATCTTTGCTGGAAAACAGTTGGAAGACGGCCGCACGTTGTCTGATTACAA 48441 Query 25011 CATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058 |||||||||||| |||| | ||||| || || || | ||||| || Sbjct 48440 CATACAGAAAGAATCCACATTACATTTGGTATTGCGTCTCCGCGGTGG 48393 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 ||||| || || || ||||| ||||| |||||||| || || | || || ||| || Sbjct 57703 ATGCAAATCTTCGTAAAAACATTAACTGGCAAAACTATCACTTTGGAAGTTGAACCGTCA 57644 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 || | | | |||| |||||| | || ||| | |||||||| | || |||||| Sbjct 57643 GATACTATCGAAAATGTTAAAGCCAAGATTCAAGACAAAGAAGGTATTCCTCCAGACCAG 57584 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 |||||||| || | ||| ||||| ||||||||||| || || |||||| | Sbjct 57583 CAACGTTTGATTTTTGCCGGCAAGCAACTGGAAGACGGACGCACCTTGTCCGATTATAAT 57524 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059 || ||||| ||| | || | ||||| || |||| ||||||| ||| Sbjct 57523 ATTCAGAAGGAGTCAACCTTGCATTTGGTCCTACGTCTGCGCGGTGGT 57476 Score = 82.4 bits (90), Expect = 6e-11 Identities = 129/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 ||||| |||||||||||||| || || || ||||| || || | || || ||| || Sbjct 48391 ATGCAAATATTTGTTAAAACTTTGACTGGAAAAACCATCACTTTGGAAGTAGAACCGTCG 48332 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 || | | | |||| ||||| | |||||| | || ||||| | || ||||| Sbjct 48331 GATACTATCGAAAACGTTAAAGCAAAAATCCAAGACAAGGAAGGTATTCCTCCAGACCAA 48272 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 || |||||||| | || ||||||||| |||||||| | || || ||||||| | Sbjct 48271 CAGCGTTTAATTTTCGCTGGCAAACAATTGGAAGATGGCCGCACATTGTCTGATTACAAC 48212 Query 25012 ATACA 25016 ||||| Sbjct 48211 ATACA 48207 >seq394 Length=301216 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 |||||||| || || || || || || |||||||| || || | || || || || Sbjct 217474 ATGCAGATCTTCGTGAAGACATTGACTGGCAAAACTATCACTTTAGAGGTTGAGCCGTCT 217415 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| | | || | ||| |||| |||||| | || ||||| | ||| || ||| Sbjct 217414 GACACTATTGAGAATGTCAAGGCTAAAATTCAAGATAAGGAAGGAATCCCGCCAGATCAG 217355 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 || |||||||| | ||| || || ||| |||| ||| | ||| | ||||| | | Sbjct 217354 CAGCGTTTAATTTTTGCTGGAAAGCAATTGGAGGATGGCCGTACTCTTTCGGATTATAAC 217295 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058 |||||||||||| | || | |||||||| |||| ||||| || || Sbjct 217294 ATACAGAAAGAGTCAACTTTGCATTTAGTCCTACGTTTGCGTGGGGG 217248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418283984937920