Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq54 125 1e-23 >seq54 Length=1451896 Score = 125 bits (138), Expect = 1e-23 Identities = 353/532 (66%), Gaps = 15/532 (3%) Strand=Plus/Minus Query 35175 TATCCATTTTTGGACCCCAAATGAGGTTCTCTCTTCGAGACGACACTATTCCAGTTCTCA 35234 |||| || ||||| |||||||| ||||| | | |||| || ||||| ||| | | Sbjct 133368 TATCTATATTTGGTGCCCAAATGCGGTTCAATTTGCGAG----CATCATTCCCGTTATTA 133313 Query 35235 -CTACCAAGAAAATTTTCTGGAGAGGAGTTGTG-GAAGAACTCTCGTGGTTCATCAGGGG 35292 |||| |||||| | |||||| | | || ||| |||||||| ||||| || || || Sbjct 133312 ACTACAAAGAAAGTGTTCTGGCGTGCGGT-GTGTGAAGAACTACTTTGGTTTATAAGTGG 133254 Query 35293 CAATACAGACGCCAAAGAATTGGCCAAGAAGAAGATACACATCTGGAACGCTAATGGGTC 35352 || || || || |||| | || || || || ||||||||||| | ||| | Sbjct 133253 CAGCACTGATGCGAAAGTTCTACAAAACAAAAACATTCACATCTGGAATGGTAACGCTAG 133194 Query 35353 GCGGGAATTTTTGGACAGTAGAGGGTTATACGATAGAGCAGAGGGAGATTTGGGACCCGT 35412 || ||||||||||| || | ||||| ||| | | ||| || || ||||| || | Sbjct 133193 TCGTGAATTTTTGGATAGATGCGGGTTCAGCGACCGTGAAGAAGGTGACTTGGGGCCAAT 133134 Query 35413 ATACGGATTCCAATGGCGTCATTTTGGTGCTGAATATGATACCTGT---TCTTCCGATTA 35469 ||||| || |||||||| |||||||| || ||||| || ||| | | || Sbjct 133133 TTACGGTTTTCAATGGCGCCATTTTGGGGCACAATATCGCACTTGTCGCGATAGCTATGG 133074 Query 35470 TACTGGAAAGGGTATTGATCAATTGGCCAATATACTAAAGACCCTGAGAGAAAATCCAGA 35529 ||| |||| || | ||||||||| | ||| | | ||| | | |||||| Sbjct 133073 TAC-GGAA--GGAGTCGATCAATTGAAACAGATAATTAGGACAATAACTACAAATCCCAC 133017 Query 35530 TGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACCTTATGGCTCTTCC 35589 ||| || | |||||| | | | |||||||| | ||| | | ||||| | || Sbjct 133016 AGATCGACGTATGATTTTATCCTCTTGGAATCCAGTAGATATACCAAAAATGGCCTTACC 132957 Query 35590 TCCATGCCACATGACT-GCTCAATTTTATGTGGCTAATGGAGAATTGTCGTGCCAGTTGT 35648 || ||||| || | || ||||| ||||| | ||| || ||||| || || | | Sbjct 132956 GCCCTGCCA-TTGCTTGGCCCAATTCTATGTATCCAATAATGAGTTGTCATGTCAACTTT 132898 Query 35649 ATCAGCGAAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGCATCATA 35700 ||||||| || | ||| | ||| |||| || || || ||||| ||||| || Sbjct 132897 ATCAGCGCAGTGCCGATATGGGGCTGGGTGTCCCATTTAATATAGCATCGTA 132846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989534222069330