Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020
15-01-15] 3,926 sequences; 380,104,241 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq180 122 9e-23
seq197 111 2e-19
seq394 107 2e-18
seq343 107 2e-18
seq961 102 8e-17
seq110 102 8e-17
seq362 98.7 1e-15
>seq180
Length=539930
Score = 122 bits (134), Expect = 9e-23
Identities = 166/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| ||||| |||||||| || | || | || || ||||||||||| ||||||||| |
Sbjct 121376 CCACCTCGCAAACGCAACACAAGATGTAATGTGGATTCTTTTTGAATATTATAATCGGAC 121435
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| ||||| ||||| | || || ||||| | |||| |||||||| ||||| ||
Sbjct 121436 AATGTGCGACCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGGTGGA 121495
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716
|| || |||||||| ||| | || | ||||| | ||| | ||||| | ||| || ||
Sbjct 121496 ATTCCCTCTTTGTC-CTGAATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGAC 121554
Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
||||| || | |||||||| || | |||||||| || || ||||||
Sbjct 121555 CTCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCATA 121603
>seq197
Length=390979
Score = 111 bits (122), Expect = 2e-19
Identities = 467/727 (64%), Gaps = 19/727 (3%)
Strand=Plus/Minus
Query 153072 TTGACAACTTGAAATTCGCCCGACAATACACGTCTCAA--AAACAAATTACTGTGAAACG 153129
||||| || |||||| || ||||||||||||| |||| | || ||| | ||
Sbjct 298913 TTGACGACAATAAATTCACCGGACAATACACGTCGTGTGTAAACGTTTGAC-GTGTA-CG 298856
Query 153130 GTTCAAACGACTCGTTGTTATTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACGCCA 153189
| ||||| |||||||| ||| || ||||| || || | || || ||||| || |
Sbjct 298855 GCTCAAAAGACTCGTTATTACCAAGAATTTGAGCAGTGGACGCGGTAGGCATTGGTGCTA 298796
Query 153190 CAAGCAACGAATTACGTAATCCGTGTTTTTGTATGTTCATCTTCAATTGT-GACCAGTCC 153248
| ||||| ||||| || | ||| | | | |||| | |||| || | ||||| | |
Sbjct 298795 CCAGCAAGGAATTGCGCACTCCATAACTCTTAATGT-CGTCTTTAAGAGCCGACCAATTC 298737
Query 153249 CATAACGAAGTAGGTATCGCATTCCACAAATCGTATTGCAATATCCCTTGGCTAGCTTTG 153308
|||| |||||| | || ||||| ||| ||||| | || |||| ||| ||
Sbjct 298736 CATAGATCAGTAGGCGTTTTATCCCACATATCATATTGAAGAATGCCTTTACTAACTGGA 298677
Query 153309 CTACCGGCAAACGTGCTATACGGCTC--ACTGTCAGACGCCAGTTTCAAACTGGCATCGA 153366
||||| || | || || || | | ||| | |||| | |||| || || |
Sbjct 298676 CTACCTTCATATGTTTCGTAAGGACCGTATTGTTTG--GCCAACTCACAACTAGCCTCTA 298619
Query 153367 GCGCGGCATGATACACAGTTTCGGAAATCTGTTTGTTCAGTAAAACGGCAGCAT---CGC 153423
|| ||| ||| | ||||| |||| ||||| || ||| ||||||| |||
Sbjct 298618 AAGCACCATAATATATGGTTTCAAAAATTTGTTTATT---TAAGCGAGCAGCATTCTCGC 298562
Query 153424 TCACGTACGGTATGCGCAACATGACAAATGCATCGGCCAAACCTTGAATGCCAATGCCTA 153483
| | || || |||| | | | ||| || || || ||||| | || || || |
Sbjct 298561 TTTCATAGGGGTAACGCATTAAAATTAGTGCGTCAGCAAATCCTTGGACACCTATACCGA 298502
Query 153484 TGGGACGATGGCGCATATTAGAtttttttGCAGCTTCAACAGGATAGAAATTGCGGTCGA 153543
| |||||||| || | |||||||||||| || | | ||||| ||||| |||||
Sbjct 298501 TTGGACGATGACGTAAATTAGATTTTTTGGCTTCCGGCAGCGGATAATAATTGACGTCGA 298442
Query 153544 TAATTTTATTTAAACTAATCACGACATGTTTCACCACAGAATGCAACAGTTGAAAATCAA 153603
| || || || | | | | | | | || | || | || || ||||||
Sbjct 298441 TTATCTTGTTAAGATTTCTTGTTATAAGCTTTGCAACTTCTTTCAGTTTCTGGAAATCAT 298382
Query 153604 ACGTTCCAT---TAATGATATATTTGTTGACGGCAATCGACGCCAAGTTGCAAACGGCAG 153660
| | || | | | | | || || ||||| || |||| |||||||| ||
Sbjct 298381 ATTGTTTATCTGTCGTCACGAACATATTCACCGCAATTGAGGCCAGATTGCAAACTGCTA 298322
Query 153661 TTTCGTCGGGGGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAGGC 153720
|||| || | | ||||| || ||||| | |||||| || ||||||||||| ||
Sbjct 298321 TTTCCTCAGCCGACGTATATTCGACAATTTCTGTACACAAGTTACTGCATTTTATTGTGC 298262
Query 153721 CGCAATTACTTTGATTGCTTTTGCGGTTACAAGCGTCCTTGTATAGCATGTATGGTGTGC 153780
| ||| |||||| |||||||| |||||||| || ||||| |||||||| || || |
Sbjct 298261 CAACATTCTGTTGATTACTTTTGCGATTACAAGCATCTTTGTAAAGCATGTAAGGAGTTC 298202
Query 153781 CGGTTTC 153787
|||| ||
Sbjct 298201 CGGTCTC 298195
>seq394
Length=301216
Score = 107 bits (118), Expect = 2e-18
Identities = 165/230 (72%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596
||| || || | ||| || || || || | |||||| || ||||| || ||||| ||
Sbjct 217019 GCCTCCGCGAAGACGTAACACCAAATGGAGCGTAGATTCCTTTTGGATATTATAGTCTGA 217078
Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656
|| |||| ||||| ||||| ||||| ||| | || | || || ||||| |||||
Sbjct 217079 CAAGGTGCGGCCATCTTCCAGCTGCTTACCGGCAAAAATTAAGCGCTGTTGATCTGGAGG 217138
Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTC-CACT-GTGTCGGTGGGCTCC 139714
|||||||||||||| ||| |||||| |||| | |||| || | || || | ||| ||
Sbjct 217139 AATGCCTTCTTTGTC-TTGAATTTTTGCTTTAAC-GTTCTCAATAGTATCCGAGGGTTCT 217196
Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|| || | || | || || || ||||| |||||||| || || |||||
Sbjct 217197 ACTTCTAAAGTGATGGTTTTACCTGTCAAAGTTTTTACAAAGATCTGCAT 217246
>seq343
Length=430003
Score = 107 bits (118), Expect = 2e-18
Identities = 144/198 (73%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627
|| ||||| || ||||| ||||||||| || |||| |||||| || || || ||
Sbjct 57507 GTTGACTCCTTCTGAATATTATAATCGGACAAGGTGCGTCCGTCTTCCAGTTGCTTGCCG 57566
Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687
||| | |||| ||||||||| || ||||| || ||||||||||| ||| | || | |||
Sbjct 57567 GCAAAAATCAAACGTTGCTGGTCTGGAGGAATACCTTCTTTGTC-TTGAATCTTGGCTTT 57625
Query 139688 AGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746
| | | ||| | || || | || || || || | || | || ||||| || || ||
Sbjct 57626 AACATTTTCGATAGTATCTGACGGTTCAACTTCCAAAGTGATAGTTTTGCCAGTTAATGT 57685
Query 139747 TTTTACGAATATTTGCAT 139764
||||||||| ||||||||
Sbjct 57686 TTTTACGAAGATTTGCAT 57703
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| || || | |||||| || || || | || || ||||| || ||||| ||||| |
Sbjct 48393 CCACCGCGGAGACGCAATACCAAATGTAATGTGGATTCTTTCTGTATGTTGTAATCAGAC 48452
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| |||| |||||| | |||||| |||||| |||||| ||| || || || |||||
Sbjct 48453 AACGTGCGGCCGTCTTCCAACTGTTTTCCAGCAAAGATCAAACGCTGTTGGTCTGGAGGA 48512
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717
|| ||||| ||||| ||||||| ||| | | ||| | || || | | || ||
Sbjct 48513 ATACCTTCCTTGTCTTGGATTTTTGCTTTAACGTTTTCGATAGTATCCGACGATTCTACT 48572
Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|| | || | || || |||||||| || || || |||||||||||
Sbjct 48573 TCCAAAGTGATGGTTTTACCGGTCAAAGTCTTAACAAATATTTGCAT 48619
>seq961
Length=34630
Score = 102 bits (112), Expect = 8e-17
Identities = 434/677 (64%), Gaps = 19/677 (3%)
Strand=Plus/Plus
Query 153129 GGTTCAAACGACTCGTTGTTATTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACGCC 153188
|| ||||| |||||||||||| || ||||| || || | ||||| ||||| ||
Sbjct 3653 GGCTCAAAAGACTCGTTGTTACCAAGAATTTGAGCAGTAGACGCCGTAGGCATTGGAGCT 3712
Query 153189 ACAAGCAACGAATTACGTAATCCGTGTTTTTGTATGTTCATCTTCAATTGT-GACCAGTC 153247
|| ||||| ||||| || | ||| | ||| |||| | |||| || | ||||| |
Sbjct 3713 ACCAGCAAAGAATTGCGCACTCCATAACTTTTAATGT-CGTCTTTAAGAGCCGACCAATT 3771
Query 153248 CCATAACGAAGTAGGTATCGCATTCCACAAATCGTATTGCAATATCCCTTGGCTAGCTTT 153307
||||| |||||| | || ||||| ||| ||||| | || |||| ||| ||
Sbjct 3772 CCATAGATCAGTAGGCGTTTTATCCCACATATCATATTGAAGGATACCTTTACTAACTGG 3831
Query 153308 GCTACCGGCAAACGTGCTATACGGCTC--ACTGTCAGACGCCAGTTTCAAACTGGCATCG 153365
||||| || | || ||||| | ||||| | |||| || |||| || ||
Sbjct 3832 ACTACCTTCATAGGTTTCGTACGGACCGTACTGTTTG--GCCAATTCACAACTAGCTTCT 3889
Query 153366 AGCGCGGCATGATACACAGTTTCGGAAATCTGTTTGTTCAGTAAAACGGCAGCA---TCG 153422
| || ||| ||| | ||||| |||| ||||| || ||| |||||| |||
Sbjct 3890 AAGGCACCATAATATATTGTTTCAAAAATTTGTTTATT---TAAGCGTGCAGCACTTTCG 3946
Query 153423 CTCACGTACGGTATGCGCAACATGACAAATGCATCGGCCAAACCTTGAATGCCAATGCCT 153482
|| | || || |||| | | | ||| || || || ||||| | || | ||
Sbjct 3947 CTTTCATAGGGATAACGCATTAAAATTAGTGCGTCAGCAAATCCTTGGACACCTAAACCA 4006
Query 153483 ATGGGACGATGGCGCATATTAGAtttttttGCAGCTTCAACAG--GATAGAAATTGCGGT 153540
|| |||||||| || | |||||| ||| | | | | |||| ||||| ||||| |
Sbjct 4007 ATTGGACGATGACGAAAATTAGACTTTCTGGTTTC--CGACAGCGGATAGTAATTGACAT 4064
Query 153541 CGATAATTTTATTTAAACTAATCACGACATGTTTCACCACAGAATGCAACAGTTGAAAAT 153600
|||| || || || | | | | | | || | || | | |||||||
Sbjct 4065 CGATTATCTTGTTGAGGTTTCTTGTTATAAGCTTGGCAACTTCTTTGAGTTTGTGAAAAT 4124
Query 153601 CAAACGTTCCATTAATGATAT---ATTTGTTGACGGCAATCGACGCCAAGTTGCAAACGG 153657
|| | | || || | | | || | ||||| || || | |||||||| |
Sbjct 4125 CATATTGTTTATCTGTGGTCACGAACATATTCAACGCAATTGAGGCTAGATTGCAAACTG 4184
Query 153658 CAGTTTCGTCGGGGGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCA 153717
| |||| || | | ||||| |||||||| | |||||| || |||||||||||
Sbjct 4185 CTATTTCTTCAGCTGATGTATATTCGACTATTTCTGTACACAAGTTACTGCATTTTATAG 4244
Query 153718 GGCCGCAATTACTTTGATTGCTTTTGCGGTTACAAGCGTCCTTGTATAGCATGTATGGTG 153777
||| ||| |||||| ||||| || |||||||| || ||||| |||||||| || |
Sbjct 4245 TGCCAACATTCTGTTGATTACTTTTACGATTACAAGCATCTTTGTAAAGCATGTAAGGAG 4304
Query 153778 TGCCGGTTTCGGCTTGA 153794
| ||||| || |||||
Sbjct 4305 TCCCGGTCTCTACTTGA 4321
>seq110
Length=875010
Score = 102 bits (112), Expect = 8e-17
Identities = 161/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| || || | ||| | || ||||| | || ||||| ||||| |||||||||||
Sbjct 86431 CCACCACGGAGACGAAGTACCAAGTGCAAGGTCGACTCCTTTTGTATGTTATAATCCGAT 86372
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| || | | ||||| | ||||||||||| | |||| |||||| ||||| |||||
Sbjct 86371 AAAGTCCGCCCATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGGA 86312
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716
||||||||||| || ||| |||| | || | | ||| | ||||||| ||||| ||
Sbjct 86311 ATGCCTTCTTTATC-CTGAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAAC 86253
Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|| | || | || ||||| || | ||||| || || ||||||||
Sbjct 86252 TTCCAAAGTAATAGTTTTGCCAGTAAGAGTTTTAACAAAAATTTGCAT 86205
>seq362
Length=381446
Score = 98.7 bits (108), Expect = 1e-15
Identities = 433/677 (64%), Gaps = 19/677 (3%)
Strand=Plus/Minus
Query 153129 GGTTCAAACGACTCGTTGTTATTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACGCC 153188
|| ||||| |||||||||||| || ||||| || || | ||||| ||||| ||
Sbjct 9081 GGCTCAAAAGACTCGTTGTTACCAAGAATTTGAGCAGTAGACGCCGTAGGCATTGGAGCT 9022
Query 153189 ACAAGCAACGAATTACGTAATCCGTGTTTTTGTATGTTCATCTTCAATTGT-GACCAGTC 153247
|| ||||| ||||| || | ||| | ||| |||| | |||| || | ||||| |
Sbjct 9021 ACCAGCAAAGAATTGCGCACTCCATAACTTTTAATGT-CGTCTTTAAGAGCCGACCAATT 8963
Query 153248 CCATAACGAAGTAGGTATCGCATTCCACAAATCGTATTGCAATATCCCTTGGCTAGCTTT 153307
||||| |||||| | || ||||| ||| ||||| | || |||| ||| ||
Sbjct 8962 CCATAGATCAGTAGGCGTTTTATCCCACATATCATATTGAAGGATACCTTTACTAACTGG 8903
Query 153308 GCTACCGGCAAACGTGCTATACGGCTC--ACTGTCAGACGCCAGTTTCAAACTGGCATCG 153365
||||| || | || ||||| | ||||| | |||| || |||| || ||
Sbjct 8902 ACTACCTTCATAGGTTTCGTACGGACCGTACTGTTTG--GCCAATTCACAACTAGCTTCT 8845
Query 153366 AGCGCGGCATGATACACAGTTTCGGAAATCTGTTTGTTCAGTAAAACGGCAGCA---TCG 153422
| || ||| ||| | ||||| |||| ||||| || ||| |||||| |||
Sbjct 8844 AAGGCACCATAATATATTGTTTCAAAAATTTGTTTATT---TAAGCGTGCAGCACTTTCG 8788
Query 153423 CTCACGTACGGTATGCGCAACATGACAAATGCATCGGCCAAACCTTGAATGCCAATGCCT 153482
|| | || || |||| | | | ||| || || || ||||| | || | ||
Sbjct 8787 CTTTCATAGGGATAACGCATTAAAATTAGTGCGTCAGCAAATCCTTGGACACCTAAACCA 8728
Query 153483 ATGGGACGATGGCGCATATTAGAtttttttGCAGCTTCAACAG--GATAGAAATTGCGGT 153540
|| |||||||| || | |||||| ||| | | | | |||| ||||| ||||| |
Sbjct 8727 ATTGGACGATGACGAAAATTAGACTTTCTGGTTTC--CGACAGCGGATAGTAATTGACAT 8670
Query 153541 CGATAATTTTATTTAAACTAATCACGACATGTTTCACCACAGAATGCAACAGTTGAAAAT 153600
|||| || || || | | | | | | || | || | | |||||||
Sbjct 8669 CGATTATCTTGTTGAGGTTTCTTGTTATAAGCTTGGCAACTTCTTTGAGTTTGTGAAAAT 8610
Query 153601 CAAACGTTCCATTAATGATAT---ATTTGTTGACGGCAATCGACGCCAAGTTGCAAACGG 153657
|| | | || || | | | || | ||||| || || | |||||||| |
Sbjct 8609 CATATTGTTTATCTGTGGTCACGAACATATTCAACGCAATTGAGGCTAGATTGCAAACTG 8550
Query 153658 CAGTTTCGTCGGGGGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCA 153717
| |||| || | | ||||| || ||||| | |||||| || |||||||||||
Sbjct 8549 CTATTTCTTCAGCTGATGTATATTCGACGATTTCTGTACACAAGTTACTGCATTTTATAG 8490
Query 153718 GGCCGCAATTACTTTGATTGCTTTTGCGGTTACAAGCGTCCTTGTATAGCATGTATGGTG 153777
||| ||| |||||| ||||| || |||||||| || ||||| |||||||| || |
Sbjct 8489 TGCCAACATTCTGTTGATTACTTTTACGATTACAAGCATCTTTGTAAAGCATGTAAGGAG 8430
Query 153778 TGCCGGTTTCGGCTTGA 153794
| ||||| || |||||
Sbjct 8429 TCCCGGTCTCTACTTGA 8413
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496039655659200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |