Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq180 122 9e-23 seq197 111 2e-19 seq394 107 2e-18 seq343 107 2e-18 seq961 102 8e-17 seq110 102 8e-17 seq362 98.7 1e-15 >seq180 Length=539930 Score = 122 bits (134), Expect = 9e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| |||||||| || | || | || || ||||||||||| ||||||||| | Sbjct 121376 CCACCTCGCAAACGCAACACAAGATGTAATGTGGATTCTTTTTGAATATTATAATCGGAC 121435 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||||| ||||| | || || ||||| | |||| |||||||| ||||| || Sbjct 121436 AATGTGCGACCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGGTGGA 121495 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || || |||||||| ||| | || | ||||| | ||| | ||||| | ||| || || Sbjct 121496 ATTCCCTCTTTGTC-CTGAATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGAC 121554 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||| || | |||||||| || | |||||||| || || |||||| Sbjct 121555 CTCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCATA 121603 >seq197 Length=390979 Score = 111 bits (122), Expect = 2e-19 Identities = 467/727 (64%), Gaps = 19/727 (3%) Strand=Plus/Minus Query 153072 TTGACAACTTGAAATTCGCCCGACAATACACGTCTCAA--AAACAAATTACTGTGAAACG 153129 ||||| || |||||| || ||||||||||||| |||| | || ||| | || Sbjct 298913 TTGACGACAATAAATTCACCGGACAATACACGTCGTGTGTAAACGTTTGAC-GTGTA-CG 298856 Query 153130 GTTCAAACGACTCGTTGTTATTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACGCCA 153189 | ||||| |||||||| ||| || ||||| || || | || || ||||| || | Sbjct 298855 GCTCAAAAGACTCGTTATTACCAAGAATTTGAGCAGTGGACGCGGTAGGCATTGGTGCTA 298796 Query 153190 CAAGCAACGAATTACGTAATCCGTGTTTTTGTATGTTCATCTTCAATTGT-GACCAGTCC 153248 | ||||| ||||| || | ||| | | | |||| | |||| || | ||||| | | Sbjct 298795 CCAGCAAGGAATTGCGCACTCCATAACTCTTAATGT-CGTCTTTAAGAGCCGACCAATTC 298737 Query 153249 CATAACGAAGTAGGTATCGCATTCCACAAATCGTATTGCAATATCCCTTGGCTAGCTTTG 153308 |||| |||||| | || ||||| ||| ||||| | || |||| ||| || Sbjct 298736 CATAGATCAGTAGGCGTTTTATCCCACATATCATATTGAAGAATGCCTTTACTAACTGGA 298677 Query 153309 CTACCGGCAAACGTGCTATACGGCTC--ACTGTCAGACGCCAGTTTCAAACTGGCATCGA 153366 ||||| || | || || || | | ||| | |||| | |||| || || | Sbjct 298676 CTACCTTCATATGTTTCGTAAGGACCGTATTGTTTG--GCCAACTCACAACTAGCCTCTA 298619 Query 153367 GCGCGGCATGATACACAGTTTCGGAAATCTGTTTGTTCAGTAAAACGGCAGCAT---CGC 153423 || ||| ||| | ||||| |||| ||||| || ||| ||||||| ||| Sbjct 298618 AAGCACCATAATATATGGTTTCAAAAATTTGTTTATT---TAAGCGAGCAGCATTCTCGC 298562 Query 153424 TCACGTACGGTATGCGCAACATGACAAATGCATCGGCCAAACCTTGAATGCCAATGCCTA 153483 | | || || |||| | | | ||| || || || ||||| | || || || | Sbjct 298561 TTTCATAGGGGTAACGCATTAAAATTAGTGCGTCAGCAAATCCTTGGACACCTATACCGA 298502 Query 153484 TGGGACGATGGCGCATATTAGAtttttttGCAGCTTCAACAGGATAGAAATTGCGGTCGA 153543 | |||||||| || | |||||||||||| || | | ||||| ||||| ||||| Sbjct 298501 TTGGACGATGACGTAAATTAGATTTTTTGGCTTCCGGCAGCGGATAATAATTGACGTCGA 298442 Query 153544 TAATTTTATTTAAACTAATCACGACATGTTTCACCACAGAATGCAACAGTTGAAAATCAA 153603 | || || || | | | | | | | || | || | || || |||||| Sbjct 298441 TTATCTTGTTAAGATTTCTTGTTATAAGCTTTGCAACTTCTTTCAGTTTCTGGAAATCAT 298382 Query 153604 ACGTTCCAT---TAATGATATATTTGTTGACGGCAATCGACGCCAAGTTGCAAACGGCAG 153660 | | || | | | | | || || ||||| || |||| |||||||| || Sbjct 298381 ATTGTTTATCTGTCGTCACGAACATATTCACCGCAATTGAGGCCAGATTGCAAACTGCTA 298322 Query 153661 TTTCGTCGGGGGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAGGC 153720 |||| || | | ||||| || ||||| | |||||| || ||||||||||| || Sbjct 298321 TTTCCTCAGCCGACGTATATTCGACAATTTCTGTACACAAGTTACTGCATTTTATTGTGC 298262 Query 153721 CGCAATTACTTTGATTGCTTTTGCGGTTACAAGCGTCCTTGTATAGCATGTATGGTGTGC 153780 | ||| |||||| |||||||| |||||||| || ||||| |||||||| || || | Sbjct 298261 CAACATTCTGTTGATTACTTTTGCGATTACAAGCATCTTTGTAAAGCATGTAAGGAGTTC 298202 Query 153781 CGGTTTC 153787 |||| || Sbjct 298201 CGGTCTC 298195 >seq394 Length=301216 Score = 107 bits (118), Expect = 2e-18 Identities = 165/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| || || || || | |||||| || ||||| || ||||| || Sbjct 217019 GCCTCCGCGAAGACGTAACACCAAATGGAGCGTAGATTCCTTTTGGATATTATAGTCTGA 217078 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| ||||| ||||| ||||| ||| | || | || || ||||| ||||| Sbjct 217079 CAAGGTGCGGCCATCTTCCAGCTGCTTACCGGCAAAAATTAAGCGCTGTTGATCTGGAGG 217138 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTC-CACT-GTGTCGGTGGGCTCC 139714 |||||||||||||| ||| |||||| |||| | |||| || | || || | ||| || Sbjct 217139 AATGCCTTCTTTGTC-TTGAATTTTTGCTTTAAC-GTTCTCAATAGTATCCGAGGGTTCT 217196 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || | || | || || || ||||| |||||||| || || ||||| Sbjct 217197 ACTTCTAAAGTGATGGTTTTACCTGTCAAAGTTTTTACAAAGATCTGCAT 217246 >seq343 Length=430003 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || ||||| ||||||||| || |||| |||||| || || || || Sbjct 57507 GTTGACTCCTTCTGAATATTATAATCGGACAAGGTGCGTCCGTCTTCCAGTTGCTTGCCG 57566 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| | |||| ||||||||| || ||||| || ||||||||||| ||| | || | ||| Sbjct 57567 GCAAAAATCAAACGTTGCTGGTCTGGAGGAATACCTTCTTTGTC-TTGAATCTTGGCTTT 57625 Query 139688 AGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | | ||| | || || | || || || || | || | || ||||| || || || Sbjct 57626 AACATTTTCGATAGTATCTGACGGTTCAACTTCCAAAGTGATAGTTTTGCCAGTTAATGT 57685 Query 139747 TTTTACGAATATTTGCAT 139764 ||||||||| |||||||| Sbjct 57686 TTTTACGAAGATTTGCAT 57703 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | |||||| || || || | || || ||||| || ||||| ||||| | Sbjct 48393 CCACCGCGGAGACGCAATACCAAATGTAATGTGGATTCTTTCTGTATGTTGTAATCAGAC 48452 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| |||||| | |||||| |||||| |||||| ||| || || || ||||| Sbjct 48453 AACGTGCGGCCGTCTTCCAACTGTTTTCCAGCAAAGATCAAACGCTGTTGGTCTGGAGGA 48512 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| ||||| ||||||| ||| | | ||| | || || | | || || Sbjct 48513 ATACCTTCCTTGTCTTGGATTTTTGCTTTAACGTTTTCGATAGTATCCGACGATTCTACT 48572 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | || || |||||||| || || || ||||||||||| Sbjct 48573 TCCAAAGTGATGGTTTTACCGGTCAAAGTCTTAACAAATATTTGCAT 48619 >seq961 Length=34630 Score = 102 bits (112), Expect = 8e-17 Identities = 434/677 (64%), Gaps = 19/677 (3%) Strand=Plus/Plus Query 153129 GGTTCAAACGACTCGTTGTTATTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACGCC 153188 || ||||| |||||||||||| || ||||| || || | ||||| ||||| || Sbjct 3653 GGCTCAAAAGACTCGTTGTTACCAAGAATTTGAGCAGTAGACGCCGTAGGCATTGGAGCT 3712 Query 153189 ACAAGCAACGAATTACGTAATCCGTGTTTTTGTATGTTCATCTTCAATTGT-GACCAGTC 153247 || ||||| ||||| || | ||| | ||| |||| | |||| || | ||||| | Sbjct 3713 ACCAGCAAAGAATTGCGCACTCCATAACTTTTAATGT-CGTCTTTAAGAGCCGACCAATT 3771 Query 153248 CCATAACGAAGTAGGTATCGCATTCCACAAATCGTATTGCAATATCCCTTGGCTAGCTTT 153307 ||||| |||||| | || ||||| ||| ||||| | || |||| ||| || Sbjct 3772 CCATAGATCAGTAGGCGTTTTATCCCACATATCATATTGAAGGATACCTTTACTAACTGG 3831 Query 153308 GCTACCGGCAAACGTGCTATACGGCTC--ACTGTCAGACGCCAGTTTCAAACTGGCATCG 153365 ||||| || | || ||||| | ||||| | |||| || |||| || || Sbjct 3832 ACTACCTTCATAGGTTTCGTACGGACCGTACTGTTTG--GCCAATTCACAACTAGCTTCT 3889 Query 153366 AGCGCGGCATGATACACAGTTTCGGAAATCTGTTTGTTCAGTAAAACGGCAGCA---TCG 153422 | || ||| ||| | ||||| |||| ||||| || ||| |||||| ||| Sbjct 3890 AAGGCACCATAATATATTGTTTCAAAAATTTGTTTATT---TAAGCGTGCAGCACTTTCG 3946 Query 153423 CTCACGTACGGTATGCGCAACATGACAAATGCATCGGCCAAACCTTGAATGCCAATGCCT 153482 || | || || |||| | | | ||| || || || ||||| | || | || Sbjct 3947 CTTTCATAGGGATAACGCATTAAAATTAGTGCGTCAGCAAATCCTTGGACACCTAAACCA 4006 Query 153483 ATGGGACGATGGCGCATATTAGAtttttttGCAGCTTCAACAG--GATAGAAATTGCGGT 153540 || |||||||| || | |||||| ||| | | | | |||| ||||| ||||| | Sbjct 4007 ATTGGACGATGACGAAAATTAGACTTTCTGGTTTC--CGACAGCGGATAGTAATTGACAT 4064 Query 153541 CGATAATTTTATTTAAACTAATCACGACATGTTTCACCACAGAATGCAACAGTTGAAAAT 153600 |||| || || || | | | | | | || | || | | ||||||| Sbjct 4065 CGATTATCTTGTTGAGGTTTCTTGTTATAAGCTTGGCAACTTCTTTGAGTTTGTGAAAAT 4124 Query 153601 CAAACGTTCCATTAATGATAT---ATTTGTTGACGGCAATCGACGCCAAGTTGCAAACGG 153657 || | | || || | | | || | ||||| || || | |||||||| | Sbjct 4125 CATATTGTTTATCTGTGGTCACGAACATATTCAACGCAATTGAGGCTAGATTGCAAACTG 4184 Query 153658 CAGTTTCGTCGGGGGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCA 153717 | |||| || | | ||||| |||||||| | |||||| || ||||||||||| Sbjct 4185 CTATTTCTTCAGCTGATGTATATTCGACTATTTCTGTACACAAGTTACTGCATTTTATAG 4244 Query 153718 GGCCGCAATTACTTTGATTGCTTTTGCGGTTACAAGCGTCCTTGTATAGCATGTATGGTG 153777 ||| ||| |||||| ||||| || |||||||| || ||||| |||||||| || | Sbjct 4245 TGCCAACATTCTGTTGATTACTTTTACGATTACAAGCATCTTTGTAAAGCATGTAAGGAG 4304 Query 153778 TGCCGGTTTCGGCTTGA 153794 | ||||| || ||||| Sbjct 4305 TCCCGGTCTCTACTTGA 4321 >seq110 Length=875010 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||| | || ||||| ||||| ||||||||||| Sbjct 86431 CCACCACGGAGACGAAGTACCAAGTGCAAGGTCGACTCCTTTTGTATGTTATAATCCGAT 86372 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | | ||||| | ||||||||||| | |||| |||||| ||||| ||||| Sbjct 86371 AAAGTCCGCCCATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGGA 86312 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||||||||| || ||| |||| | || | | ||| | ||||||| ||||| || Sbjct 86311 ATGCCTTCTTTATC-CTGAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAAC 86253 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | || ||||| || | ||||| || || |||||||| Sbjct 86252 TTCCAAAGTAATAGTTTTGCCAGTAAGAGTTTTAACAAAAATTTGCAT 86205 >seq362 Length=381446 Score = 98.7 bits (108), Expect = 1e-15 Identities = 433/677 (64%), Gaps = 19/677 (3%) Strand=Plus/Minus Query 153129 GGTTCAAACGACTCGTTGTTATTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACGCC 153188 || ||||| |||||||||||| || ||||| || || | ||||| ||||| || Sbjct 9081 GGCTCAAAAGACTCGTTGTTACCAAGAATTTGAGCAGTAGACGCCGTAGGCATTGGAGCT 9022 Query 153189 ACAAGCAACGAATTACGTAATCCGTGTTTTTGTATGTTCATCTTCAATTGT-GACCAGTC 153247 || ||||| ||||| || | ||| | ||| |||| | |||| || | ||||| | Sbjct 9021 ACCAGCAAAGAATTGCGCACTCCATAACTTTTAATGT-CGTCTTTAAGAGCCGACCAATT 8963 Query 153248 CCATAACGAAGTAGGTATCGCATTCCACAAATCGTATTGCAATATCCCTTGGCTAGCTTT 153307 ||||| |||||| | || ||||| ||| ||||| | || |||| ||| || Sbjct 8962 CCATAGATCAGTAGGCGTTTTATCCCACATATCATATTGAAGGATACCTTTACTAACTGG 8903 Query 153308 GCTACCGGCAAACGTGCTATACGGCTC--ACTGTCAGACGCCAGTTTCAAACTGGCATCG 153365 ||||| || | || ||||| | ||||| | |||| || |||| || || Sbjct 8902 ACTACCTTCATAGGTTTCGTACGGACCGTACTGTTTG--GCCAATTCACAACTAGCTTCT 8845 Query 153366 AGCGCGGCATGATACACAGTTTCGGAAATCTGTTTGTTCAGTAAAACGGCAGCA---TCG 153422 | || ||| ||| | ||||| |||| ||||| || ||| |||||| ||| Sbjct 8844 AAGGCACCATAATATATTGTTTCAAAAATTTGTTTATT---TAAGCGTGCAGCACTTTCG 8788 Query 153423 CTCACGTACGGTATGCGCAACATGACAAATGCATCGGCCAAACCTTGAATGCCAATGCCT 153482 || | || || |||| | | | ||| || || || ||||| | || | || Sbjct 8787 CTTTCATAGGGATAACGCATTAAAATTAGTGCGTCAGCAAATCCTTGGACACCTAAACCA 8728 Query 153483 ATGGGACGATGGCGCATATTAGAtttttttGCAGCTTCAACAG--GATAGAAATTGCGGT 153540 || |||||||| || | |||||| ||| | | | | |||| ||||| ||||| | Sbjct 8727 ATTGGACGATGACGAAAATTAGACTTTCTGGTTTC--CGACAGCGGATAGTAATTGACAT 8670 Query 153541 CGATAATTTTATTTAAACTAATCACGACATGTTTCACCACAGAATGCAACAGTTGAAAAT 153600 |||| || || || | | | | | | || | || | | ||||||| Sbjct 8669 CGATTATCTTGTTGAGGTTTCTTGTTATAAGCTTGGCAACTTCTTTGAGTTTGTGAAAAT 8610 Query 153601 CAAACGTTCCATTAATGATAT---ATTTGTTGACGGCAATCGACGCCAAGTTGCAAACGG 153657 || | | || || | | | || | ||||| || || | |||||||| | Sbjct 8609 CATATTGTTTATCTGTGGTCACGAACATATTCAACGCAATTGAGGCTAGATTGCAAACTG 8550 Query 153658 CAGTTTCGTCGGGGGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCA 153717 | |||| || | | ||||| || ||||| | |||||| || ||||||||||| Sbjct 8549 CTATTTCTTCAGCTGATGTATATTCGACGATTTCTGTACACAAGTTACTGCATTTTATAG 8490 Query 153718 GGCCGCAATTACTTTGATTGCTTTTGCGGTTACAAGCGTCCTTGTATAGCATGTATGGTG 153777 ||| ||| |||||| ||||| || |||||||| || ||||| |||||||| || | Sbjct 8489 TGCCAACATTCTGTTGATTACTTTTACGATTACAAGCATCTTTGTAAAGCATGTAAGGAG 8430 Query 153778 TGCCGGTTTCGGCTTGA 153794 | ||||| || ||||| Sbjct 8429 TCCCGGTCTCTACTTGA 8413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496039655659200