Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq158 280 1e-70 >seq158 Length=613782 Score = 280 bits (310), Expect = 1e-70 Identities = 510/737 (69%), Gaps = 12/737 (2%) Strand=Plus/Plus Query 13664 TGACATAAAC--ACTTTATCACAAC-CTAGTTCTAATAGTAATCTATCAGCAATAAACTC 13720 ||| |||||| || || || || | ||||||||||||| || | ||| |||| | | || Sbjct 555535 TGAAATAAACTTACCTT-TCCCACCTCTAGTTCTAATAGCAAACGATCGGCAACATATTC 555593 Query 13721 AATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTGGT 13780 ||||||| | |||| || | ||||| || |||| | || || | | || Sbjct 555594 TATATATTTACACATACTTTCGCTGTTCATGCCAATTAAGTCGACTGGTAAGGCCTCTGT 555653 Query 13781 TAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAATTGTAATAATC---TCATT 13837 ||||| |||||||| || || || ||| |||| || || || |||| || || Sbjct 555654 CAAAAACTCTTTTTCAATTTTAACGGCATCTGTTATTAT--TTCCAA-AATCCGTTCTTT 555710 Query 13838 AGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTC 13897 || | | | | ||||||||| ||||| |||||| ||||| || | ||| || Sbjct 555711 GCTCGGTTTTTGTATCAAATGTTTAAACATTAATACCGCAAATTCACAGTGCAAGCCTTC 555770 Query 13898 ATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAA 13957 ||| | || | ||| || || || ||||| |||||||| | ||| ||||| |||| Sbjct 555771 ATCGCGTGATATCATTTCATTAGAGAACGTTAAACCTGGCATTATTCCACGTTTCTTTAG 555830 Query 13958 CCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTAT 14017 ||||||||| | ||| || ||| ||||||||| || || || ||||| || ||||| Sbjct 555831 CCAAAATATCGAAGCGAAGCTCCCACTAAAGAATATACCTTCGACGGCAGCGAAAGCTAT 555890 Query 14018 TAATCGTTCTCC-AAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtt 14076 | ||||| || ||| | | | | | |||||||| | |||||||| | | Sbjct 555891 AACACGTTCACCGAAATTAGCCGAATGCGAT-GATATCCAAGCTAGTGCCCATTCCGCCT 555949 Query 14077 tttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATATTCCTTCTCTTTAGTAC 14136 | || |||| || |||||| ||||| |||||||||| ||||||||| ||||| | Sbjct 555950 TCTTCTTAACCAATGGCATTGTCTCAATGGCATTAAATAGATATTCCTTTTCTTTCTCAT 556009 Query 14137 TTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTA 14196 | || ||||| || |||||||| ||||||||||| ||||||| |||||||| || | Sbjct 556010 CTCTGATATATGTTTCGATAAGTAAACTATACATTTCCGAGTGTACATTTTCCATGGCAA 556069 Query 14197 TCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCCGAGTAAAATCTTTCGG 14256 | ||||| ||||||||||| | ||||| | ||| || || | |||||| ||| Sbjct 556070 TTTGAAACCCATAAAAGCAACGTGCTTCGGTTATTTGAACCTCTTGGGAAAATCGTTCCA 556129 Query 14257 CCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAA 14316 | ||||| |||||||| |||||||| || |||||||| ||||| | || | ||||| Sbjct 556130 CTAAATTCTCATTAACAATACCATCGGATGCCGCAAAAAAAGCCAAAACGTGTGAAATAA 556189 Query 14317 AGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGATAAATCCTTAGAAAGATCTACTT 14376 | | | || |||| | | ||||||||| | ||| ||||| || || |||| Sbjct 556190 AATGACGTTCGCCATTACTTAACCGATTCCAATCGTCGATATCTTTAGAGAGGTCAACTT 556249 Query 14377 CATCAACTGTCCAAAAA 14393 | || | ||||||||| Sbjct 556250 CTTCTGCAGTCCAAAAA 556266 Score = 82.4 bits (90), Expect = 7e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 13572 ACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGT 13631 ||||| |||||||||||||| | ||||||||| |||||||| || ||||| || || | Sbjct 555379 ACGCCAATTTTTTGATATTCCCCAACTCTTTTCTCAAAGAAATTCGTTTTGCCATCAATA 555438 Query 13632 GATATATTTTCCATAAAATCAAATGGATTT 13661 ||| || | ||| || |||||||||||| Sbjct 555439 CTTATTTTATTCATGAATTCAAATGGATTT 555468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479704457348400