Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq158 257 2e-63 >seq158 Length=613782 Score = 257 bits (284), Expect = 2e-63 Identities = 499/733 (68%), Gaps = 4/733 (1%) Strand=Plus/Plus Query 13452 TGACATAAAC--ACTTTATCACAAC-CTAGTTCTAATAATAATCTATCAGCAATAAACTC 13508 ||| |||||| || || || || | |||||||||||| || | ||| |||| | | || Sbjct 555535 TGAAATAAACTTACCTT-TCCCACCTCTAGTTCTAATAGCAAACGATCGGCAACATATTC 555593 Query 13509 AATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTAGT 13568 ||||||| | |||| || | ||||| || |||| | || || | | || Sbjct 555594 TATATATTTACACATACTTTCGCTGTTCATGCCAATTAAGTCGACTGGTAAGGCCTCTGT 555653 Query 13569 TAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCTTAATAATGTCATTAGA 13628 ||||| |||||||| || || || || |||| || | ||| || || Sbjct 555654 CAAAAACTCTTTTTCAATTTTAACGGCATCTGTTATTATTTCCAAAATCCGTTCTTTGCT 555713 Query 13629 AGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATC 13688 || | | | | ||||||||| ||||| |||||| ||||| || | ||| ||||| Sbjct 555714 CGGTTTTTGTATCAAATGTTTAAACATTAATACCGCAAATTCACAGTGCAAGCCTTCATC 555773 Query 13689 TCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCA 13748 | || | ||| || || || ||||| |||||||| | ||| ||||| |||| ||| Sbjct 555774 GCGTGATATCATTTCATTAGAGAACGTTAAACCTGGCATTATTCCACGTTTCTTTAGCCA 555833 Query 13749 AAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAG 13808 |||||| | |||||| || ||||||||| || || || ||||| || ||||| | Sbjct 555834 AAATATCGAAGCGAAGCTCCCACTAAAGAATATACCTTCGACGGCAGCGAAAGCTATAAC 555893 Query 13809 TCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttt 13868 ||||| || || || | ||||||||| | |||||||| | || || Sbjct 555894 ACGTTCACCGAAATTAGCCGAATGCGATGATATCCAAGCTAGTGCCCATTCCGCCTTCTT 555953 Query 13869 tttAATAAAATCCATTGTTTCGATTGCATTGAATAAATGTTCCTTCTCTTTAGTACTTGA 13928 |||| || |||||| || || ||||| |||| || |||||| ||||| | | Sbjct 555954 CTTAACCAATGGCATTGTCTCAATGGCATTAAATAGATATTCCTTTTCTTTCTCATCTCT 556013 Query 13929 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTG 13988 || ||||| || |||||||| ||||||||||| ||||||| ||||| || || || || Sbjct 556014 GATATATGTTTCGATAAGTAAACTATACATTTCCGAGTGTACATTTTCCATGGCAATTTG 556073 Query 13989 AAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAA 14048 ||| |||||||| || | ||||| | ||| ||||| | |||||| ||| | || Sbjct 556074 AAACCCATAAAAGCAACGTGCTTCGGTTATTTGAACCTCTTGGGAAAATCGTTCCACTAA 556133 Query 14049 GTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTA 14108 || ||||||||||||||||| || |||||||| ||||| | || | |||||| | Sbjct 556134 ATTCTCATTAACAATACCATCGGATGCCGCAAAAAAAGCCAAAACGTGTGAAATAAAATG 556193 Query 14109 TTGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATC 14168 | || |||| | | ||||||||| | | ||| ||||| || || ||||| || Sbjct 556194 ACGTTCGCCATTACTTAACCGATTCCAATCGTCGATATCTTTAGAGAGGTCAACTTCTTC 556253 Query 14169 AACTGTCCaaaaa 14181 | ||||||||| Sbjct 556254 TGCAGTCCAAAAA 556266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478565313254640