Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq110 116 3e-21 seq343 109 4e-19 seq394 96.9 3e-15 seq180 95.1 9e-15 >seq110 Length=875010 Score = 116 bits (128), Expect = 3e-21 Identities = 145/196 (74%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977 ||||||||| | || ||||| || || || || | || ||||||||||| || || || Sbjct 86396 CTCCTTTTGTATGTTATAATCCGATAAAGTCCGCCCATCTTCCAATTGTTTACCAGCGAA 86337 Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTC 43036 |||||| || |||||||| | || | |||||||| || ||| || | ||||| Sbjct 86336 AATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATC-CTGAATTTTGGCCTTGACAT 86278 Query 43037 TGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCA 43096 | ||| |||||| || ||| || || | || |||||||| || || |||||||| | Sbjct 86277 TTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATAGTTTTGCCAGTAAGAGTTTTAA 86218 Query 43097 CAAAAATTTGCATTTT 43112 |||||||||||||||| Sbjct 86217 CAAAAATTTGCATTTT 86202 >seq343 Length=430003 Score = 109 bits (120), Expect = 4e-19 Identities = 166/235 (71%), Gaps = 1/235 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || ||||| | || |||||||| | || |||||| || | ||| ||||||||| Sbjct 57477 CCACCGCGCAGACGTAGGACCAAATGCAAGGTTGACTCCTTCTGAATATTATAATCGGAC 57536 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || ||| |||| |||| ||| ||||||||||||||||| || || || || | || Sbjct 57537 AAGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCAAAAATCAAACGTTGCTGGTCTGGAGGA 57596 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||||||| || ||| |||| || | | | || || | || || Sbjct 57597 ATACCTTCTTTGTCTTGAATCTTGGCTTTAACATTTTCGATAGTATCTGACGGTTCAACT 57656 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTTCTTAA 43117 || | || |||||||| || |||| ||||| || || ||||||||||| |||| Sbjct 57657 TCCAAAGTGATAGTTTTGCCAGTTAATGTTTTTACGAAGATTTGCATTTT-TTAA 57710 Score = 107 bits (118), Expect = 1e-18 Identities = 134/184 (73%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || |||| | || |||||||| | || |||||| || | ||||||||||||| Sbjct 54242 CCACCGCGCAAACGTAGGACCAAATGCAAGGTTGACTCCTTCTGAATATTGTAATCGGAC 54301 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || ||| |||| |||| ||||||||||||||||||||| || |||||||| | || Sbjct 54302 AAGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCAAAAATCAAACGTTGTTGATCTGGGGGG 54361 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || || | ||||| | ||| ||||||| || |||||| Sbjct 54362 ATTCCTTCCTTATCTTGAATTTTAGCCTTGACATTCTCAATTGTGTCGGAAGGCTCGACT 54421 Query 43063 TCTA 43066 |||| Sbjct 54422 TCTA 54425 Score = 91.5 bits (100), Expect = 1e-13 Identities = 162/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| ||||||| | ||| |||||||||| || || || || | ||||| || || Sbjct 48620 GCCACCACGCAAACGTAAAACCAAATGGAGTGTCGATTCTTTCTGAATGTTGTAGTCAGA 48679 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 | ||| || | | ||||| |||||||| ||||| ||||| || |||||||| | || Sbjct 48680 GAGTGTGCGGCCATTTTCCAACTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGG 48739 Query 43002 CACACCTTCTTTTTCGCTGA--TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCG 43059 ||||| ||||| || ||| | | | ||| || | ||| || ||| | ||| Sbjct 48740 GACACCCTCTTTATCT-TGAATTTTAGT-TTTAACATTCTCAATAGTATCGGATGGCTCA 48797 Query 43060 ACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 || || | || ||||||||||| || | || ||||| || || |||||||| Sbjct 48798 ACCTCCAAGGTGATAGTTTTTCCAGTCAATGTCTTCACGAATATCTGCATTTT 48850 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| || || | | ||||| || | ||| |||||||| | |||||||| ||| Sbjct 45687 CCTCCGCGGAGACGCAGTACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCAGAC 45746 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 ||||| || | || |||||||||||||| || ||||| || ||||||||||| | || Sbjct 45747 AATGTGCGGCCATCTTCCAATTGTTTGCCAGCGAAAATTAAACGCTGTTGATCTGGAGGA 45806 Query 43003 ACACCTTCTTTTTC 43016 | |||||| || || Sbjct 45807 ATACCTTCCTTGTC 45820 >seq394 Length=301216 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 |||||| || || | |||||||||||||| || |||||||| | ||| || || || Sbjct 217019 GCCTCCGCGAAGACGTAACACCAAATGGAGCGTAGATTCCTTTTGGATATTATAGTCTGA 217078 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 ||| || || | || |||| || || ||||||||||| || ||||||||||| | || Sbjct 217079 CAAGGTGCGGCCATCTTCCAGCTGCTTACCGGCAAAAATTAAGCGCTGTTGATCTGGAGG 217138 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | |||||||| || || |||| || | ||| || || | || || Sbjct 217139 AATGCCTTCTTTGTCTTGAATTTTTGCTTTAACGTTCTCAATAGTATCCGAGGGTTCTAC 217198 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| || || ||||| || || | |||||| ||||| || ||||| Sbjct 217199 TTCTAAAGTGATGGTTTTACCTGTCAAAGTTTTTACAAAGATCTGCAT 217246 >seq180 Length=539930 Score = 95.1 bits (104), Expect = 9e-15 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 42898 AACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCG 42957 ||||| | ||| | ||| || ||||| | ||| |||||||||||||| || | || Sbjct 121391 AACACAAGATGTAATGTGGATTCTTTTTGAATATTATAATCGGACAATGTGCGACCATCT 121450 Query 42958 TCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCG 43017 |||||||| || || || ||||||||||| || || |||| || | || ||||| || Sbjct 121451 TCCAATTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGGTGGAATTCCCTCTTTGTC- 121509 Query 43018 CTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGT 43076 ||| ||| |||| || | | | ||||| | ||||| || | || || || Sbjct 121510 CTGAATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGACCTCAAGAGTGATGGT 121569 Query 43077 TTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 || || ||||| ||||| |||||||| ||||| || Sbjct 121570 CTTGCCCGTTAGGGTTTTTACAAAAATCTGCATATT 121605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381351352179708