Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq158 118 2e-21 seq197 104 3e-17 >seq158 Length=613782 Score = 118 bits (130), Expect = 2e-21 Identities = 462/719 (64%), Gaps = 18/719 (3%) Strand=Plus/Minus Query 125038 AGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATT 125097 |||| | ||||| |||||||| | ||||| || || || || || || | |||||| Sbjct 556279 AGGCGGAAGCCTCTTTTTGGACTGCAGAAGAAGTTGACCTCTCTAAAGATATCGACGATT 556220 Query 125098 GGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTG 125157 || | ||| || | | | || || | ||||| || ||| ||||||| || |||| Sbjct 556219 GGAA---TCGGTTAAGTAATGGCGAACGTCATTTTATTTCACACGTTTTGGCTTTTTTTG 556163 Query 125158 CCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCA 125217 | | |||||||| || || || || ||| | || |||||| || |||||| | | Sbjct 556162 CGGCATCCGATGGTATTGTTAATGAGAATTTAGTGGAACGATTTTCCCAAGAGGTTCAAA 556103 Query 125218 TTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAA 125277 | | || | |||||||| || || ||||| || || || || |||||||||| Sbjct 556102 TAACCGAAGCACGTTGCTTTTATGGGTTTCAAATTGCCATGGAAAATGTACACTCGGAAA 556043 Query 125278 TGTACTCTACACTGATTGACATGTACATTCGCGATCCGCAACGTAAACACAT-GCTCTTT 125336 |||| | ||| || || | || || | ||| | || | ||| || || ||| Sbjct 556042 TGTATAGTTTACTTATCGAAACATATATCAGAGATGAG-AAAGAAAAGGAATATCTATTT 555984 Query 125337 AACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATC 125396 || || || || || |||| | | || ||||| |||||| | ||||| Sbjct 555983 AATGCCATTGAGACAATGCCATTGGTTAAGAAGAAGGCGGAATGGGCACTAGCTTGGAT- 555925 Query 125397 GATGA-CG-ACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCA 125454 || | || | | || | || || | | | || ||||| ||||| || || | Sbjct 555924 -ATCATCGCATTCGGCTAATTTCGGTGAACGTGTTATAGCTTTCGCTGCCGTCGAAGGTA 555866 Query 125455 TCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCG 125514 | |||||| || || || || | || |||||||| ||||| || ||| | ||||| | Sbjct 555865 TATTCTTTAGTGGGAGCTTCGCTTCGATATTTTGGCTAAAGAAACGTGGAATAATGCCAG 555806 Query 125515 GACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCA 125574 | | ||| | ||| || | ||||| || || || ||| | |||||||| ||||| Sbjct 555805 GTTTAACGTTCTCTAATGAAATGATATCACGCGATGAAGGCTTGCACTGTGAATTTGCGG 555746 Query 125575 TTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCA 125634 | || ||||| || || || | | | | ||| | ||| | | | Sbjct 555745 TATTAATGTTT---AAACATTTGATAC------AAAAACCGAGCAAAGAACGGATTTTGG 555695 Query 125635 ACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCA 125694 | || |||| |||||||| | || ||| |||||||| | || || || |||| ||| Sbjct 555694 AAATAATAACAGATGCCGTTAAAATTGAAAAAGAGTTTTTGACAGAGGCCTTACCAGTCG 555635 Query 125695 GCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGT 125753 | | |||||||||||| || | ||||| | || ||||| | ||| || |||||| Sbjct 555634 ACTTAATTGGCATGAACAGCGAAAGTATGTGTAAATATATAGAATATGTTGCCGATCGT 555576 >seq197 Length=390979 Score = 104 bits (114), Expect = 3e-17 Identities = 318/483 (66%), Gaps = 14/483 (3%) Strand=Plus/Plus Query 97785 AACTCTTTGCTGGTGGCACCGATGCCCACGGCTACCACTTCCCAAGTGTTTGGCAATGCT 97844 || || |||||||| ||||| ||||| || || ||||| | ||| | |||| ||| Sbjct 298783 AATTCCTTGCTGGTAGCACCAATGCCTACCGCGTCCACTGCTCAAATTCTTGGTAATAAC 298842 Query 97845 GAATCTTTTGAACCGTTCACGTCAAACATGTACCAGAGACGCACCCAGTCTGGAGAGTTT 97904 || |||||||| |||| |||||||||| | ||| |||| ||| || || ||| Sbjct 298843 GAGTCTTTTGAGCCGTACACGTCAAACGTTTACACACGACGTGTATTGTCCGGTGAATTT 298902 Query 97905 CAATTGAC--CAACGTGCACTTGGTTCGAGACTTG---GAACGGCTCAATCTGTGGAACG 97959 |||| | ||| || ||| | ||| ||| ||| || | || ||||| | Sbjct 298903 --ATTGTCGTCAATCATCATTTGCTCAAAGATTTGACTGAATTGCGC---CTTTGGAATG 298957 Query 97960 ATGACATGGCCCAGTTGATCATGT-ACAACAATGGGTCCATTCAAAACATTACCATCATC 98018 |||||||| | || || || ||| | || || || ||||||||| ||| Sbjct 298958 ATGACATGAAAAACTTAATATTGGCACATCGC-GGCTCAATACAAAACATTGAGGCCATA 299016 Query 98019 CCGGAAGAGTTGCGCAGAATC-TACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGAT 98077 || || ||| ||||| || || || || ||||| ||| || || | || Sbjct 299017 CCTGAT-AGTATAAAAGAATTGTATAAAACGGTTTGGGAAATTTCGGTGAAATCAACCAT 299075 Query 98078 CGATATGGCTGCCGACAGAGGTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGT 98137 | ||||||||||| | |||| | ||| ||||| || ||||| |||||| | |||| Sbjct 299076 TAACATGGCTGCCGATCGCGGTGCTTTCATCGACCAAAGCCAATCATTCAATATACACGT 299135 Query 98138 TGCCGAGCCCACCTACAGTCGTATGACTTCGATACACTTTTACGCATGGAACAAGGGCCT 98197 || || || | || || || |||| ||||| ||||| | |||||| || | Sbjct 299136 AGCTGAACCTAGTTATGGTAAATTGTCTTCTATACATTTTTATGGATGGAAAGCCGGTTT 299195 Query 98198 CAAGACGGGCATGTACTATCTGAGAACAAAGTCGGCCACCAATGCCATACCATTTACGGT 98257 ||||| || ||||| ||||| | ||||||| | || | ||| ||| || ||||| || Sbjct 299196 AAAGACCGGTATGTATTATCTAAAAACAAAGCCAGCAGCGAATCCCACACATTTTACAGT 299255 Query 98258 GGA 98260 || Sbjct 299256 CGA 299258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741022832519760