Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq110 145 6e-30 seq180 129 4e-25 seq343 120 2e-22 seq539 104 2e-17 seq394 95.1 9e-15 >seq110 Length=875010 Score = 145 bits (160), Expect = 6e-30 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || | ||| || || ||||||||||| ||||| || | | | | | ||||| Sbjct 86413 ACCAAGTGCAAGGTCGACTCCTTTTGTATGTTATAATCCGATAAAGTCCGCCCATCTTCC 86354 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 |||||||| |||||| | |||||||||||||| || ||||| |||||||| || | Sbjct 86353 AATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCCTGA 86294 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 |||||| ||| ||| |||| || || ||| | || || || || ||||| ||||| Sbjct 86293 ATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATAGTTTTG 86234 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15367 || || |||||||| |||||||||||||| ||| Sbjct 86233 CCAGTAAGAGTTTTAACAAAAATTTGCATTTTT 86201 >seq180 Length=539930 Score = 129 bits (142), Expect = 4e-25 Identities = 169/232 (73%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||| ||| | || || | ||| | ||||| |||||||| || || |||||| Sbjct 121376 CCACCTCGCAAACGCAACACAAGATGTAATGTGGATTCTTTTTGAATATTATAATCGG-- 121433 Query 15197 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 | ||| || | ||||| ||||| || |||||| | ||||| ||||| |||||| || Sbjct 121434 ACAATGTGCGACCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGGTG 121493 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 ||||||| |||||||| ||| ||| |||||| |||| || || || ||| | Sbjct 121494 GAATTCCCTCTTTGTCCTGAATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGA 121553 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 | || | || ||||| || || || || |||||||||||||| |||||||| Sbjct 121554 CCTCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCATATT 121605 >seq343 Length=430003 Score = 120 bits (132), Expect = 2e-22 Identities = 156/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || ||||| | ||||| ||||| |||||||||||||| | | | ||||| Sbjct 48408 AATACCAAATGTAATGTGGATTCTTTCTGTATGTTGTAATCAGACAACGTGCGGCCGTCT 48467 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || || ||||| ||||| | |||||||| |||||||| ||||| ||||| ||||| Sbjct 48468 TCCAACTGTTTTCCAGCAAAGATCAAACGCTGTTGGTCTGGAGGAATACCTTCCTTGTCT 48527 Query 15272 CAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 ||||| ||| || || |||| || ||||| |||||| || || || ||||| Sbjct 48528 TGGATTTTTGCT-TTAACGTTTTCGATAGTATCCGACGATTCTACTTCCAAAGTGATGGT 48586 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 |||||| |||| ||| || ||||| |||||||| Sbjct 48587 TTTACCGGTCAAAGTCTTAACAAATATTTGCAT 48619 Score = 111 bits (122), Expect = 1e-19 Identities = 140/188 (74%), Gaps = 6/188 (3%) Strand=Plus/Plus Query 15179 TGTATGTTGTAATCGCTTAGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCA 15236 |||||||||||||| | ||| || | ||||| ||||||||||||||| | || | Sbjct 48207 TGTATGTTGTAATCAG--ACAATGTGCGGCCATCTTCCAATTGTTTGCCAGCGAAAATTA 48264 Query 15237 AACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTC-ACAAATTTTGCTCTTTACAATTTCT 15295 |||| |||||||| ||||| ||||| ||||| | ||||||| || || |||| Sbjct 48265 AACGCTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGGATTTTTGCT-TTAACGTTTTCG 48323 Query 15296 ATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAA 15355 || ||||| |||||| || || || |||||||| || |||| |||||| ||||| Sbjct 48324 ATAGTATCCGACGGTTCTACTTCCAAAGTGATGGTTTTTCCAGTCAAAGTTTTAACAAAT 48383 Query 15356 ATTTGCAT 15363 |||||||| Sbjct 48384 ATTTGCAT 48391 Score = 105 bits (116), Expect = 5e-18 Identities = 167/238 (70%), Gaps = 1/238 (0%) Strand=Plus/Plus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 ||||||| | ||| | |||||| ||||| || || || ||||| || |||||||| || Sbjct 48619 TGCCACCACGCAAACGTAAAACCAAATGGAGTGTCGATTCTTTCTGAATGTTGTAGTCAG 48678 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 || | | | | ||| || ||||||||||| | |||||||||||||| || || Sbjct 48679 AGAGTGTGCGGCCATTTTCCAACTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTG 48738 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 | | || ||||| || |||||| | || ||| | || || |||||| || | Sbjct 48739 GGACACCCTCTTTATCTTGAATTTTAGTTTTAACATTCTCAATAGTATCGGATGGCTCAA 48798 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAAA 15372 | || ||||| || ||||| || |||| || || || || || ||||| ||| |||| Sbjct 48799 CCTCCAAGGTGATAGTTTTTCCAGTCAATGTCTTCACGAATATCTGCAT-TTTAAAAA 48855 Score = 104 bits (114), Expect = 2e-17 Identities = 165/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | || | || || ||||| | ||| || || || || || || |||||| Sbjct 57477 CCACCGCGCAGACGTAGGACCAAATGCAAGGTTGACTCCTTCTGAATATTATAATCGGAC 57536 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | ||||||| | ||| ||||| || | ||||||||||| ||||| ||| Sbjct 57537 AAGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCAAAAATCAAACGTTGCTGGTCTGGAGGA 57596 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||||||||| ||| ||| || ||| |||| || ||||| ||| || Sbjct 57597 ATACCTTCTTTGTCTTGAATCTTGGCTTTAACATTTTCGATAGTATCTGACGGTTCAACT 57656 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAAAT 15373 || || || || ||||| || || | |||||||| || |||||||| ||| ||||| Sbjct 57657 TCCAAAGTGATAGTTTTGCCAGTTAATGTTTTTACGAAGATTTGCATTTTTTAAAAT 57713 Score = 91.5 bits (100), Expect = 1e-13 Identities = 134/185 (72%), Gaps = 6/185 (3%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CGTCTT 15212 || || ||||| || || || ||||||||||||||||| | ||| || | |||| Sbjct 45705 ACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCAG--ACAATGTGCGGCCATCTT 45762 Query 15213 CTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTC-A 15271 | ||||||||||||||| | || ||||| ||||| || ||||| ||||| ||||| Sbjct 45763 CCAATTGTTTGCCAGCGAAAATTAAACGCTGTTGATCTGGAGGAATACCTTCCTTGTCTT 45822 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 | ||||||| || || |||| || ||||| |||||| || || || |||||| Sbjct 45823 GGATTTTTGCT-TTAACGTTTTCGATAGTATCCGACGGTTCTACTTCCAAAGTGATGGTT 45881 Query 15332 TTACC 15336 || || Sbjct 45882 TTTCC 45886 >seq539 Length=405157 Score = 104 bits (114), Expect = 2e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 15151 TAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTC 15210 |||||| ||||| || || | | ||||||||||| || | |||| | | || Sbjct 240413 TAAAACCAAATGGAGAGTCGCGCCCTTTTGTATGTTATAGTTCGTTAGCGTGCAACTATC 240472 Query 15211 TTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTC 15270 |||||| || ||||| || || ||||| || |||| | |||||| || || || || Sbjct 240473 TTCTAACTGCTTGCCGGCATAAATCAATCGGCGTTGATTTGGTGGAATACCGTCCTTATC 240532 Query 15271 ACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 ||| ||||| || | |||| || |||||| | ||| |||||||| |||| ||| Sbjct 240533 CTGAATCTTGCTTTTAATCTTTTCAATAGTATCGGTCGGTTCGACATCTAAAGTAAGGGT 240592 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAAA 15372 || || || | ||||| |||||||| ||||| ||| |||| Sbjct 240593 ATTGCCCGTTAACGTTTTCACAAAAATCTGCATTTTTCAAAA 240634 >seq394 Length=301216 Score = 95.1 bits (104), Expect = 9e-15 Identities = 164/234 (70%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 15133 TCTGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATC 15192 |||||| || | | | ||| || ||||| || || || || ||||| || || || || Sbjct 217016 TCTGCCTCCGCGAAGACGTAACACCAAATGGAGCGTAGATTCCTTTTGGATATTATAGTC 217075 Query 15193 GCTTAGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCG 15250 | | || || | ||||| | || || || || | || || || ||||| || Sbjct 217076 --TGACAAGGTGCGGCCATCTTCCAGCTGCTTACCGGCAAAAATTAAGCGCTGTTGATCT 217133 Query 15251 TTTGGAATTCCTTCTTTGTC-ACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATT 15309 ||||| ||||||||||| || ||||||| || || | || || ||||| Sbjct 217134 GGAGGAATGCCTTCTTTGTCTTGAATTTTTGCT-TTAACGTTCTCAATAGTATCCGAGGG 217192 Query 15310 TTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 |||||| ||||| || |||||||||||||||| |||||||||||| || ||||| Sbjct 217193 TTCTACTTCTAAAGTGATGGTTTTACCTGTCAAAGTTTTTACAAAGATCTGCAT 217246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362161870404366