Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq394 109 5e-19 seq110 89.7 4e-13 seq343 82.4 6e-11 >seq394 Length=301216 Score = 109 bits (120), Expect = 5e-19 Identities = 168/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 18802 ATTTTATTGTTTTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAAT 18861 |||||| | | ||||| || | | |||||||| || | |||||| |||||||| || Sbjct 217007 ATTTTAGAATCTGCCTCCGCGAAGACGTAACACCAAATGGAGCGTAGATTCCTTTTGGAT 217066 Query 18862 ATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTG 18921 ||| || || | || || | | || |||||||| ||||| ||| |||| | | ||| Sbjct 217067 ATTATAGTCTGACAAGGTGCGGCCATCTTCCAGCTGCTTACCGGCAAAAATTAAGCGCTG 217126 Query 18922 CTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATC 18981 ||||| || | ||| |||||||| |||||| ||| || | | | |||||| Sbjct 217127 TTGATCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTGCTTTAACGTTCTCAATAGTATC 217186 Query 18982 GCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || ||| | || |||||||||||||| |||||||| ||||| || ||||| Sbjct 217187 CGAGGGTTCTACTTCTAAAGTGATGGTTTTACCTGTCAAAGTTTTTACAAAGATCTGCAT 217246 >seq110 Length=875010 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| |||||| || ||||||||||| || || ||||||| | || | || ||| Sbjct 86413 ACCAAGTGCAAGGTCGACTCCTTTTGTATGTTATAATCCGATAAAGTCCGCCCATCTTCC 86354 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 | |||||||| || |||| | | || ||||| || | ||| ||||| || | Sbjct 86353 AATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCCTGA 86294 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 ||||| || || | | | ||| ||| |||||| ||| | ||||| ||||| Sbjct 86293 ATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATAGTTTTG 86234 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCATTTT 19044 || || | |||||| ||||||||||||||||| Sbjct 86233 CCAGTAAGAGTTTTAACAAAAATTTGCATTTT 86202 >seq343 Length=430003 Score = 82.4 bits (90), Expect = 6e-11 Identities = 162/239 (68%), Gaps = 3/239 (1%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || || |||| | || |||| ||||| || |||||||| |||||||| ||||| | | Sbjct 57477 CCACCGCGCAGACGTAGGACCAAATGCAAGGTTGACTCCTTCTGAATATTATAATCGGAC 57536 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || |||| ||||| || || || ||| |||| | | ||||| || || Sbjct 57537 AAGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCAAAAATCAAACGTTGCTGGTCTGGAGGA 57596 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | || |||||||| ||| || ||| || | ||| |||||| || || | Sbjct 57597 ATACCTTCTTTGTCTTGAATCTTGGCTTTAACATTTTCGATAGTATCTGACGGTTCAACT 57656 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATTTT---AAATCT 19050 || | || || ||||| || ||||| ||||| || || ||||||||||| |||||| Sbjct 57657 TCCAAAGTGATAGTTTTGCCAGTTAATGTTTTTACGAAGATTTGCATTTTTTAAAATCT 57715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414552963468844