Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq180 136 3e-27 seq110 129 4e-25 seq343 127 1e-24 seq394 91.5 9e-14 >seq180 Length=539930 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || |||| || |||||||| | ||| ||||| || |||||||| ||||| ||||| ||| Sbjct 121376 CCACCTCGCAAACGCAACACAAGATGTAATGTGGATTCTTTTTGAATATTATAATCGGAC 121435 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 || || | || ||||||||||||||| || || || ||||||||||| | || Sbjct 121436 AATGTGCGACCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGGTGGA 121495 Query 33263 ATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACG 33322 || || ||||| || |||| |||||| ||| || ||||| ||||| || Sbjct 121496 ATTCCCTCTTTGTCCTGAATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGACC 121555 Query 33323 TCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 || ||||| || || || ||||| || |||||||| ||||| ||||| || Sbjct 121556 TCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCATATT 121605 >seq110 Length=875010 Score = 129 bits (142), Expect = 4e-25 Identities = 160/218 (73%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 ||||| ||||| |||||||| |||||||| || ||||| || ||| | | || ||| Sbjct 86413 ACCAAGTGCAAGGTCGACTCCTTTTGTATGTTATAATCCGATAAAGTCCGCCCATCTTCC 86354 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 ||||| || ||| || || |||||||| || || | || ||||||||||| || | Sbjct 86353 AATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCCTGA 86294 Query 33281 A---TCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTT 33337 | | ||| || || ||| ||| |||||| || | ||| |||| ||| || ||| Sbjct 86293 ATTTTGGCC---TTGACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATAGTT 86237 Query 33338 TTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTTTAT 33375 || || ||||||||||| || ||||||||||| ||||| Sbjct 86236 TTGCCAGTAAGAGTTTTAACAAAAATTTGCATTTTTAT 86199 >seq343 Length=430003 Score = 127 bits (140), Expect = 1e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 ||||||||||| || ||||| || || ||||| ||||| ||||| || || ||| ||| Sbjct 57495 ACCAAATGCAAGGTTGACTCCTTCTGAATATTATAATCGGACAAGGTGCGTCCGTCTTCC 57554 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 | |||||| || ||| || |||||||||||||| | || || |||||||| || | Sbjct 57555 AGTTGCTTGCCGGCAAAAATCAAACGTTGCTGGTCTGGAGGAATACCTTCTTTGTCTTGA 57614 Query 33281 ATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTT 33340 ||| ||| || ||| || || || |||| ||| |||| ||| || ||||| Sbjct 57615 ATCTTGGCTTTAACATTTTCGATAGTATCTGACGGTTCAACTTCCAAAGTGATAGTTTTG 57674 Query 33341 CCCGTAAGAGTTTTTACGAAAATTTGCATGTTT 33373 || || | ||||||||||| |||||||| ||| Sbjct 57675 CCAGTTAATGTTTTTACGAAGATTTGCATTTTT 57707 Score = 104 bits (114), Expect = 1e-17 Identities = 155/219 (71%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||| |||||||| ||||| || ||||| ||||| |||||||||||||| || | | Sbjct 48405 CGCAATACCAAATGTAATGTGGATTCTTTCTGTATGTTGTAATCAGACAACGTGCGGCCG 48464 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT- 33273 || ||||| || |||||| ||| || ||||| || ||||| | || || ||||| || Sbjct 48465 TCTTCCAACTGTTTTCCAGCAAAGATCAAACGCTGTTGGTCTGGAGGAATACCTTCCTTG 48524 Query 33274 --TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || | | | || ||| || ||| || || || | || || |||| ||| Sbjct 48525 TCTTGGATTTTTGC---TTTAACGTTTTCGATAGTATCCGACGATTCTACTTCCAAAGTG 48581 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || ||||| || || | ||| || || || ||||||||| Sbjct 48582 ATGGTTTTACCGGTCAAAGTCTTAACAAATATTTGCATG 48620 Score = 84.2 bits (92), Expect = 1e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 ||||||||||| || ||||| || || ||||||||||| ||||| || || ||| ||| Sbjct 54260 ACCAAATGCAAGGTTGACTCCTTCTGAATATTGTAATCGGACAAGGTGCGTCCGTCCTCC 54319 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC 33276 | ||| || || ||| || |||||||| || || | ||| || ||||| || || Sbjct 54320 AGTTGTTTGCCGGCAAAAATCAAACGTTGTTGATCTGGGGGGATTCCTTCCTTATC 54375 >seq394 Length=301216 Score = 91.5 bits (100), Expect = 9e-14 Identities = 151/217 (70%), Gaps = 6/217 (3%) Strand=Plus/Plus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 || |||||||| || |||||||| ||||| || ||||| || | | | | || ||| Sbjct 217266 ACTAAATGCAAAGTTGACTCTTTCTGTATGTTATAATCCGAAAGAGTACGGCCATCCTCC 217325 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 |||||||||||| ||| |||||||| ||||| || | || || ||||| || || | Sbjct 217326 AATTGCTTTCCAGCAAAAATTAAACGCTGCTGATCTGGCGGGATTCCTTCCTTATCTTGA 217385 Query 33281 A---TCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTT 33337 | | ||| || || | | ||| ||||| || | ||| || | ||| || ||| Sbjct 217386 ATTTTAGCC---TTGACATTCTCAATAGTGTCAGACGGCTCAACCTCTAAAGTGATAGTT 217442 Query 33338 TTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTTTA 33374 || || || | || || ||||| || ||||| |||| Sbjct 217443 TTGCCAGTCAATGTCTTCACGAAGATCTGCATTTTTA 217479 Score = 87.8 bits (96), Expect = 1e-12 Identities = 151/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 || ||||||||||| | || || || ||||| ||||| || || ||||| || | Sbjct 217032 CGTAACACCAAATGGAGCGTAGATTCCTTTTGGATATTATAGTCTGACAAGGTGCGGCCA 217091 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || |||| ||||| || ||| ||||| || || || || | || ||||||||||| Sbjct 217092 TCTTCCAGCTGCTTACCGGCAAAAATTAAGCGCTGTTGATCTGGAGGAATGCCTTCTTTG 217151 Query 33275 TCGCTAATCGCCTGTTTTACTGTT-TGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTAT 33333 || ||| || |||| ||| | ||| || || ||||| || || | ||| || Sbjct 217152 TCTTGAAT-TTTTGCTTTAACGTTCTCAATAGTATCCGAGGGTTCTACTTCTAAAGTGAT 217210 Query 33334 CGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 ||||| || || | ||||||||| || || |||||| Sbjct 217211 GGTTTTACCTGTCAAAGTTTTTACAAAGATCTGCATG 217247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318762347089548