Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq158 179 3e-40 >seq158 Length=613782 Score = 179 bits (198), Expect = 3e-40 Identities = 431/641 (67%), Gaps = 11/641 (2%) Strand=Plus/Plus Query 12962 CACC-CTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATC 13020 |||| ||| ||||| || ||| | || |||||| | ||||| || | ||| || Sbjct 555555 CACCTCTAGTTCTAATAGCAAACGATCGGCAACATATTCTATATATTTACACATACTTTC 555614 Query 13021 ACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATC 13080 | |||||| || ||||| | || || | || ||||| ||||| | |||||| || | Sbjct 555615 GCTGTTCATGCCAATTAAGTCGACTGGTAAGGCCTCTGTCAAAAACTCTTTTTCAATTTT 555674 Query 13081 AACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATTTG-AT-AGATGC 13138 ||| || || | | ||| || | | | |||||| | | | | |||| || | ||| Sbjct 555675 AACGGCATCTGTTATTATTTC-CAAAATCCGTTCTTTGCTCG-GTTTTTGTATCAAATGT 555732 Query 13139 TTAAACATCA-TACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTT 13197 |||||||| | ||| ||||| ||||||||||| |||||||| | ||| | || || Sbjct 555733 TTAAACATTAATACC-GCAAATTCACAGTGCAAGCCTTCATCGCGTGATATCATTTCATT 555791 Query 13198 TGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGA 13257 || || |||| ||| ||||| | || ||||| || | ||||||||| | ||| || Sbjct 555792 AGAGAACGTTAAACCTGGCATTATTCCACGTTTCTTTAGCCAAAATATCGAAGCGAAGCT 555851 Query 13258 ACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTA-- 13315 || ||| ||||| ||||| || || || || ||||| | | |||||| | || Sbjct 555852 CCCACTAAAGAATATACCTTCGACGGCAGCGAAAGCTATAACACGTTCACCGAAATTAGC 555911 Query 13316 CTATTTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATA 13375 | | | | |||||| | ||||| | || || | ||||| | ||| Sbjct 555912 CGAATGCGA--TGATATCCAAGCTAGTGCCCATTCCGCCTTCTTCTTAACCAATGGCATT 555969 Query 13376 TTTTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATC 13435 | || || || ||||||| ||| | ||||| || ||| ||||| || || || Sbjct 555970 GTCTCAATGGCATTAAATAGATATTCCTTTTCTTTCTCATCTCTGATATATGTTTCGATA 556029 Query 13436 AATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACAT 13495 | ||| ||||||||||| || || | ||||||||| || ||||| || |||||||| || Sbjct 556030 AGTAAACTATACATTTCCGAGTGTACATTTTCCATGGCAATTTGAAACCCATAAAAGCAA 556089 Query 13496 CTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATC 13555 | || || | || ||||| || | |||||| ||| |||| || || ||||| || Sbjct 556090 CGTGCTTCGGTTATTTGAACCTCTTGGGAAAATCGTTCCACTAAATTCTCATTAACAATA 556149 Query 13556 CCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAA 13596 || || || ||||||||||| | | ||| |||||| Sbjct 556150 CCATCGGATGCCGCAAAAAAAGCCAAAACGTGTGAAATAAA 556190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430961778300252