Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020
15-01-15] 3,926 sequences; 380,104,241 total letters
Query= NC_005179.1
Length=134721
Score E
Sequences producing significant alignments: (Bits) Value
seq158 179 3e-40
>seq158
Length=613782
Score = 179 bits (198), Expect = 3e-40
Identities = 431/641 (67%), Gaps = 11/641 (2%)
Strand=Plus/Plus
Query 12962 CACC-CTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATC 13020
|||| ||| ||||| || ||| | || |||||| | ||||| || | ||| ||
Sbjct 555555 CACCTCTAGTTCTAATAGCAAACGATCGGCAACATATTCTATATATTTACACATACTTTC 555614
Query 13021 ACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATC 13080
| |||||| || ||||| | || || | || ||||| ||||| | |||||| || |
Sbjct 555615 GCTGTTCATGCCAATTAAGTCGACTGGTAAGGCCTCTGTCAAAAACTCTTTTTCAATTTT 555674
Query 13081 AACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATTTG-AT-AGATGC 13138
||| || || | | ||| || | | | |||||| | | | | |||| || | |||
Sbjct 555675 AACGGCATCTGTTATTATTTC-CAAAATCCGTTCTTTGCTCG-GTTTTTGTATCAAATGT 555732
Query 13139 TTAAACATCA-TACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTT 13197
|||||||| | ||| ||||| ||||||||||| |||||||| | ||| | || ||
Sbjct 555733 TTAAACATTAATACC-GCAAATTCACAGTGCAAGCCTTCATCGCGTGATATCATTTCATT 555791
Query 13198 TGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGA 13257
|| || |||| ||| ||||| | || ||||| || | ||||||||| | ||| ||
Sbjct 555792 AGAGAACGTTAAACCTGGCATTATTCCACGTTTCTTTAGCCAAAATATCGAAGCGAAGCT 555851
Query 13258 ACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTA-- 13315
|| ||| ||||| ||||| || || || || ||||| | | |||||| | ||
Sbjct 555852 CCCACTAAAGAATATACCTTCGACGGCAGCGAAAGCTATAACACGTTCACCGAAATTAGC 555911
Query 13316 CTATTTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATA 13375
| | | | |||||| | ||||| | || || | ||||| | |||
Sbjct 555912 CGAATGCGA--TGATATCCAAGCTAGTGCCCATTCCGCCTTCTTCTTAACCAATGGCATT 555969
Query 13376 TTTTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATC 13435
| || || || ||||||| ||| | ||||| || ||| ||||| || || ||
Sbjct 555970 GTCTCAATGGCATTAAATAGATATTCCTTTTCTTTCTCATCTCTGATATATGTTTCGATA 556029
Query 13436 AATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACAT 13495
| ||| ||||||||||| || || | ||||||||| || ||||| || |||||||| ||
Sbjct 556030 AGTAAACTATACATTTCCGAGTGTACATTTTCCATGGCAATTTGAAACCCATAAAAGCAA 556089
Query 13496 CTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATC 13555
| || || | || ||||| || | |||||| ||| |||| || || ||||| ||
Sbjct 556090 CGTGCTTCGGTTATTTGAACCTCTTGGGAAAATCGTTCCACTAAATTCTCATTAACAATA 556149
Query 13556 CCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAA 13596
|| || || ||||||||||| | | ||| ||||||
Sbjct 556150 CCATCGGATGCCGCAAAAAAAGCCAAAACGTGTGAAATAAA 556190
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430961778300252
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |