Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq180 172 1e-37 seq158 161 2e-34 seq110 158 3e-33 seq394 149 1e-30 seq343 145 2e-29 seq539 100 7e-16 >seq180 Length=539930 Score = 172 bits (190), Expect = 1e-37 Identities = 166/213 (78%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||||||||| |||||||| ||||||||||| || || | || | ||| ||||| Sbjct 121394 ACAAGATGTAATGTGGATTCTTTTTGAATATTATAATCGGACAATGTGCGACCATCTTCC 121453 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 | ||| |||||||| ||||| | | || || || || || ||||| ||||| |||||| Sbjct 121454 AATTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGGTGGAATTCCCTCTTTGTCCTGA 121513 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| |||||||||||||| | || || ||||| ||||| || || || ||||| Sbjct 121514 ATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGACCTCAAGAGTGATGGTCTTG 121573 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || || || ||||||||||| |||||||| ||| Sbjct 121574 CCCGTTAGGGTTTTTACAAAAATCTGCATATTG 121606 >seq158 Length=613782 Score = 161 bits (178), Expect = 2e-34 Identities = 363/535 (68%), Gaps = 9/535 (2%) Strand=Plus/Minus Query 268752 AGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATT 268811 |||| | || ||||||||||||| ||||||||| || || ||| | || | |||| Sbjct 556279 AGGCGGAAGCCTCTTTTTGGACTGCAGAAGAAGTTGACCTCTCTAAAGATATCGACGATT 556220 Query 268812 GGAAAAATTTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAG 268871 |||| |||| | ||| | ||||| || | || | || |||||||| | Sbjct 556219 GGAATCGGTTAAGTAATGGCGAACGTCATTTTATTTCACACGTTTTGGCTTTTTTTGCGG 556160 Query 268872 TTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTC 268931 |||||||| ||||| || ||| |||| || || | |||||||| || || Sbjct 556159 CATCCGATGGTATTGTTAATGAGAATTTAGTGGAACGATTTTCCCAAGAGGTTCAAATAA 556100 Query 268932 CTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGT 268991 | ||||| | || ||||| || || || || || || |||||| | || || || |||| Sbjct 556099 CCGAAGCACGTTGCTTTTATGGGTTTCAAATTGCCATGGAAAATGTACACTCGGAAATGT 556040 Query 268992 ACAGTCTATTAATAGATACTTATAT-AGATGATAACAACGAAAAGAAAAGACTATTTTCT 269050 | ||| || | || || || ||||| ||| ||| | || |||||| || |||||| | Sbjct 556039 ATAGTTTACTTATCGAAACATATATCAGA-GATGAGAAAGAAAAGGAATATCTATTTAAT 555981 Query 269051 TCTAT-GAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATA-- 269107 | || |||| | ||| | || | || || | |||||||| || |||||| Sbjct 555980 GCCATTGAGA-CAATGCCATTGGTTAAGAAGAAGGCGGAATGGGCACTAGCTTGGATATC 555922 Query 269108 AACG-ATAGCGCGCCTTACGGAGAAAG-GTTAGTTGCTTTTGCCGCTGTAGAAGGTATAT 269165 | || || || || ||| ||| | |||| | ||||| || || || |||||||||| Sbjct 555921 ATCGCATTCGGCTAATTTCGGTGAACGTGTTA-TAGCTTTCGCTGCCGTCGAAGGTATAT 555863 Query 269166 TCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGAT 269225 ||||| ||| || || | || |||||| | |||||| | || | |||||||| | Sbjct 555862 TCTTTAGTGGGAGCTTCGCTTCGATATTTTGGCTAAAGAAACGTGGAATAATGCCAGGTT 555803 Query 269226 TAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGC 269280 |||| |||||||| ||| ||||| | || ||||| || ||||| || || || Sbjct 555802 TAACGTTCTCTAATGAAATGATATCACGCGATGAAGGCTTGCACTGTGAATTTGC 555748 >seq110 Length=875010 Score = 158 bits (174), Expect = 3e-33 Identities = 176/235 (75%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 104328 TTATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGT 104387 |||| || || | || | |||||| | || || || || || || || || ||||| | Sbjct 86436 TTATACCACCACGGAGACGAAGTACCAAGTGCAAGGTCGACTCCTTTTGTATGTTATAAT 86377 Query 104388 CAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAG 104447 | |||| ||| | || ||||| | |||||| ||||| ||||| | | |||||||| | Sbjct 86376 CCGATAAAGTCCGCCCATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTG 86317 Query 104448 GAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTT 104507 |||| || ||||||||||||||||| || || || |||||||| | || ||| ||| | Sbjct 86316 GAGGAATGCCTTCTTTATCCTGAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCT 86257 Query 104508 CTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 | || || | |||||||| || |||||||| ||||| ||||| || |||||||| Sbjct 86256 CAACTTCCAAAGTAATAGTTTTGCCAGTAAGAGTTTTAACAAAAATTTGCATTTT 86202 >seq394 Length=301216 Score = 149 bits (164), Expect = 1e-30 Identities = 151/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 |||||||| || || ||||||||||| || | || | || ||||| || || || || Sbjct 217050 GTAGATTCCTTTTGGATATTATAGTCTGACAAGGTGCGGCCATCTTCCAGCTGCTTACCG 217109 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||||| | ||||||||| ||||| || |||||||| || ||||| |||||||| Sbjct 217110 GCAAAAATTAAGCGCTGTTGATCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTGCTTTA 217169 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||||| |||||||| |||| || || || ||||| || | ||| Sbjct 217170 ACGTTCTCAATAGTATCCGAGGGTTCTACTTCTAAAGTGATGGTTTTACCTGTCAAAGTT 217229 Query 104543 TTTACAAATATCTGCAT 104559 |||||||| |||||||| Sbjct 217230 TTTACAAAGATCTGCAT 217246 Score = 145 bits (160), Expect = 2e-29 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || |||| ||| || || || |||||||| || ||||| || || ||||| | || || Sbjct 217263 AGGACTAAATGCAAAGTTGACTCTTTCTGTATGTTATAATCCGAAAGAGTACGGCCATCC 217322 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || | ||| |||||||||||||||| | ||| ||||| || || |||||||| ||||| Sbjct 217323 TCCAATTGCTTTCCAGCAAAAATTAAACGCTGCTGATCTGGCGGGATTCCTTCCTTATCT 217382 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 ||||| || || || ||||| || | || || || || ||||||| || ||||| Sbjct 217383 TGAATTTTAGCCTTGACATTCTCAATAGTGTCAGACGGCTCAACCTCTAAAGTGATAGTT 217442 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 || ||||| | ||| || || || ||||||||||| Sbjct 217443 TTGCCAGTCAATGTCTTCACGAAGATCTGCATTTT 217477 >seq343 Length=430003 Score = 145 bits (160), Expect = 2e-29 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || | ||| || || || || |||||||||||||| || || | || | |||||| Sbjct 57492 AGGACCAAATGCAAGGTTGACTCCTTCTGAATATTATAATCGGACAAGGTGCGTCCGTCT 57551 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || ||||| || || |||||||| | | || || || ||||| || |||||||| || Sbjct 57552 TCCAGTTGCTTGCCGGCAAAAATCAAACGTTGCTGGTCTGGAGGAATACCTTCTTTGTCT 57611 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 |||||||| ||||| |||||||| | ||||| ||||| || || | || ||||| Sbjct 57612 TGAATCTTGGCTTTAACATTTTCGATAGTATCTGACGGTTCAACTTCCAAAGTGATAGTT 57671 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 || ||||| | ||||||||| || || |||||||| Sbjct 57672 TTGCCAGTTAATGTTTTTACGAAGATTTGCATTTT 57706 Score = 136 bits (150), Expect = 9e-27 Identities = 173/237 (73%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 104325 TATTT--ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATT 104382 ||||| ||||| || | || | | ||| | ||||||||| ||||||||||| || || Sbjct 48383 TATTTGCATTCCACCGCGGAGACGCAATACCAAATGTAATGTGGATTCTTTCTGTATGTT 48442 Query 104383 ATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTG 104442 || ||||| | || | |||||||| | |||||||||||||| || | | |||||| Sbjct 48443 GTAATCAGACAACGTGCGGCCGTCTTCCAACTGTTTTCCAGCAAAGATCAAACGCTGTTG 48502 Query 104443 ATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCT 104502 || ||||| || ||||| || || || || |||||||| || ||||| | ||||| Sbjct 48503 GTCTGGAGGAATACCTTCCTTGTCTTGGATTTTTGCTTTAACGTTTTCGATAGTATCCGA 48562 Query 104503 AGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 | |||||| || | || || || ||||| || | || || |||||||| ||||| Sbjct 48563 CGATTCTACTTCCAAAGTGATGGTTTTACCGGTCAAAGTCTTAACAAATATTTGCAT 48619 Score = 134 bits (148), Expect = 3e-26 Identities = 154/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 104356 ATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTG 104415 ||| | ||| |||||||||||||| || |||||||| || || | || | ||| | || Sbjct 48644 ATGGAGTGTCGATTCTTTCTGAATGTTGTAGTCAGAGAGTGTGCGGCCATTTTCCAACTG 48703 Query 104416 TTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT 104475 ||| |||||||| || | | |||||||| || || | || |||||||| ||||| || Sbjct 48704 TTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGGGACACCCTCTTTATCTTGAATTTT 48763 Query 104476 TGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGT 104535 | ||| ||||| || | |||||| || || ||||| | || ||||| || ||||| Sbjct 48764 AGTTTTAACATTCTCAATAGTATCGGATGGCTCAACCTCCAAGGTGATAGTTTTTCCAGT 48823 Query 104536 AAGTGTTTTTACAAATATCTGCATTTT 104562 | ||| || || |||||||||||||| Sbjct 48824 CAATGTCTTCACGAATATCTGCATTTT 48850 Score = 102 bits (112), Expect = 2e-16 Identities = 124/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || | ||| || || || || ||||||||||| || || || | || | ||||| Sbjct 54257 AGGACCAAATGCAAGGTTGACTCCTTCTGAATATTGTAATCGGACAAGGTGCGTCCGTCC 54316 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || |||||||| || |||||||| | | |||||||| || || |||||||| ||||| Sbjct 54317 TCCAGTTGTTTGCCGGCAAAAATCAAACGTTGTTGATCTGGGGGGATTCCTTCCTTATCT 54376 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTA 104516 ||||| || || || ||||| || | || ||| ||| || || |||| Sbjct 54377 TGAATTTTAGCCTTGACATTCTCAATTGTGTCGGAAGGCTCGACTTCTA 54425 >seq539 Length=405157 Score = 100 bits (110), Expect = 7e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 104372 TTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATT 104431 || || || ||||||| | ||| || | || ||||||| || || || ||| |||| Sbjct 240438 TTTTGTATGTTATAGTTCGTTAGCGTGCAACTATCTTCTAACTGCTTGCCGGCATAAATC 240497 Query 104432 AGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT-ACATTTTC 104490 | | |||||| || || || || || |||||||||||| |||||||| | ||||| Sbjct 240498 AATCGGCGTTGATTTGGTGGAATACCGTCCTTATCCTGAATC-TTGCTTTTAATCTTTTC 240556 Query 104491 TACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAA 104550 | |||||| | ||||| || |||| |||| || || || || | ||||| ||||| Sbjct 240557 AATAGTATCGGTCGGTTCGACATCTAAAGTAAGGGTATTGCCCGTTAACGTTTTCACAAA 240616 Query 104551 TATCTGCATTTT 104562 ||||||||||| Sbjct 240617 AATCTGCATTTT 240628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151340482501608