Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_005344.1 Length=39043 Score E Sequences producing significant alignments: (Bits) Value seq861 120 8e-23 >seq861 Length=102403 Score = 120 bits (132), Expect = 8e-23 Identities = 230/337 (68%), Gaps = 4/337 (1%) Strand=Plus/Plus Query 21570 CCAAGCATTTGCATGGTTCCACCAACGCCTACGATAACTTCGGTAGTGAACCTATCCTGT 21629 || ||||||||||| | ||| || |||||| |||||||| ||| | || |||| || Sbjct 30677 CCGAGCATTTGCATAGCACCATTAATGCCTACAATAACTTCTGTAATATACTTATCTTGA 30736 Query 21630 CCGCTTTGATCCTGCCATTTTCTTGTCCGCAATTTGCCTTCAAGATAAACCTCAGAGCCT 21689 || |||| || |||||||||||||| | || | ||||| | ||| || | ||| ||| Sbjct 30737 CCATTTTGGTCTTGCCATTTTCTTGTTTGTAAGCTCCCTTCGATATATACTTGAGATCCT 30796 Query 21690 TTTCGCAGATATTCGCTGGCAATTTCTGCCAGTTTCCCGCTCATTACCACGCGGTGCCAC 21749 ||||| | |||||| | ||| ||||| || | ||| || || || || | |||||| Sbjct 30797 TTTCGTAAATATTCTCCGGCTATTTCAGCTAATTTTCCAAAAATAACTACTCTGTGCCAT 30856 Query 21750 TCCGTCTGCTCCTTTTGCTCTCCAGTTTGCTTATCACGCCATTGTTCTGACGTAGCAACT 21809 || || | || || ||||| || | ||||| ||||| ||| || || |||| Sbjct 30857 TCGGTTTTTTCTTTGATTTCTCCGGTATTTTTATCGCGCCAACTTTCAGATGTTGCAAGC 30916 Query 21810 GTAAGGTTTGCAAATGCCGTTCCTGATGGTGAA--TATCTGATTTCTGGATCATGCCCAA 21867 || | |||| || || |||| || ||| || | | ||||||| ||||| | Sbjct 30917 GTGATATTTGTAACGGCACTTCC--ATTAGGAATGTAGCGTACATCTGGATTTTGCCCTA 30974 Query 21868 GGCGACCAATAATGATCACCTTATTTACGCCTCTGCT 21904 | ||||| | || || ||||| | ||||| || Sbjct 30975 AATGTCCAATTAAAATGACTTTATTAATTCCTCTACT 31011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124810180922060