Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_005856.1 Length=94800 Score E Sequences producing significant alignments: (Bits) Value seq861 183 2e-41 seq1838 82.4 5e-11 >seq861 Length=102403 Score = 183 bits (202), Expect = 2e-41 Identities = 281/396 (71%), Gaps = 6/396 (2%) Strand=Plus/Minus Query 72237 GAAAATGGTGGTTTGAGCATGATTATGATCGACTACCTGCAACTTATGC--GCGTCCCCG 72294 ||| ||| ||||| || | |||||||| || || || |||||||||| ||| | || Sbjct 31519 GAACATGAAGGTTTAAGTTTAATTATGATAGATTATCTTCAACTTATGCATGCGCCTACG 31460 Query 72295 AGCTGCAAGATAACCGAACGCTGGAAATTGCCGAGATTTCTCGCTCACTGAAGGCGTTGG 72354 | | || ||| |||| | |||||||| || ||||| | || | || || |||| Sbjct 31459 ATATTTAA--TAATAGAACTTTAGAAATTGCAGAAATTTCAAGATCTTTAAAAGCCTTGG 31402 Query 72355 CGAAGGAATTACAAGTACCGGTGGTGGCATTGTCACAACTTAATCGATCGCTT-GAACAG 72413 | || ||| | ||||| || || | || ||||| || |||||||| | | || ||||| Sbjct 31401 CAAAAGAACTTCAAGTTCCAGTTATTGCTTTGTCGCAGCTTAATCG-TAGTTTAGAACAA 31343 Query 72414 CGTGCGGACAAACGACCGGTAAATTCAGATTTACGTGAATCAGGAGCAATTGAGCAGGAC 72473 | | || ||| |||| ||||||||||||||| | ||||| ||| |||| ||||| || Sbjct 31342 AGATCTGATAAAAGACCAGTAAATTCAGATTTAAGAGAATCTGGATCAATCGAGCAAGAT 31283 Query 72474 GCAGACCTGATTATGTTTCTGTATCGCGACGAAGTTTATCACCCGGATAGCGAAATGAAG 72533 ||||| | ||||||||| | ||||| |||||||||||||| |||| || | || Sbjct 31282 GCAGATGTTATTATGTTTATCTATCGTGACGAAGTTTATCATGAAAATAGTGAGACAAAA 31223 Query 72534 GGCATTGCCGAGGTAATTATCGGAAAGCAACGAAATGGCCCAATTGGCACGGTGAGATTG 72593 || || || || | ||| | ||||| ||||| || || ||||| || || | | | Sbjct 31222 GGGATAGCAGAAATTATTTTAGGAAAACAACGTAACGGACCAATCGGAACAATTCGTCTA 31163 Query 72594 GCTTTTAACGGCCAATACTCACGGTTTGATAACTAT 72629 ||||||| || ||| || | |||||||| ||| Sbjct 31162 ACTTTTAATGGAAAATGGTCTAGATTTGATAATTAT 31127 Score = 95.1 bits (104), Expect = 7e-15 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 21171 TGGCGCGACAAGCAAACGGGCCAACAGAAAGAGCAAACAGAATGGCATAAAGTCGTTTTG 21230 |||||||| || | || || || ||||| |||| |||||||| | ||| ||| | Sbjct 30897 TGGCGCGATAAAAATACCGGAGAAATCAAAGAAAAAACCGAATGGCACAGAGTAGTTATT 30838 Query 21231 TTCGGAAAACTTGCTGAAATTGCGAGTGAGTATTTACGAAAAGGTTCTCAGGTCTACATC 21290 || |||||| | |||||||| || | || |||||||||||||| ||||| || || ||| Sbjct 30837 TTTGGAAAATTAGCTGAAATAGCCGGAGAATATTTACGAAAAGGATCTCAAGTATATATC 30778 Query 21291 GAAGGGA 21297 ||||||| Sbjct 30777 GAAGGGA 30771 >seq1838 Length=5037 Score = 82.4 bits (90), Expect = 5e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 70933 GGCCCTTTAGCTCAGTGGTTAGAGCTGGCGACTCATAATCGCACGGTCACCGGTTCAAGT 70992 ||||||||||||||| ||| ||||| |||||||||||||||| |||| | ||||||| | Sbjct 4030 GGCCCTTTAGCTCAGAGGTAAGAGCAGGCGACTCATAATCGCTTGGTCGCTGGTTCAAAT 3971 Query 70993 CCGGTAGGGGCCA 71005 || | | |||||| Sbjct 3970 CCAGCAAGGGCCA 3958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 303220690764246