Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq613 145 9e-30 seq54 123 3e-23 seq711 84.2 3e-11 >seq613 Length=257901 Score = 145 bits (160), Expect = 9e-30 Identities = 221/312 (71%), Gaps = 6/312 (2%) Strand=Plus/Plus Query 164393 ATTGGAATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTCA 164452 ||||| |||||| ||||||| | || || | ||| |||||| | ||||||| Sbjct 17970 ATTGGGATTTTGGCAAAATGGGTATCGGCGGCTTGGATAAAGAATTCAATGCTATTTTCC 18029 Query 164453 GACGAGCATTTGCTTCTAGATCAGTTCCTATCGAAATAATaaaaaaaTTAGGCTGTAAAC 164512 | || || ||||| || ||| ||||| |||| | | || | | || || |||| Sbjct 18030 GTCGTGCTTTTGCCTCAAGAGTCTTTCCTCCCGAAGTGGTTGAACAGCTGGGTTGCAAAC 18089 Query 164513 ATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGAT 164572 || | ||||| ||||| || |||||||||||||| ||| ||||| ||||||||||| Sbjct 18090 ATGTCAAAGGTATTTTGTTGTATGGACCTCCTGGTACCGGCAAAACCTTAATGGCTCGCC 18149 Query 164573 GCATTGCTCAAGCTTTTAAAT---CGCGACCCGTTAAAATTGTTAATGGTCCTGAATTAT 164629 || | ||| | || ||| || || ||| |||||||| |||||||| || ||| Sbjct 18150 AAATAG-GCAATATGTTGAATGCCCGTGAGCCG--AAAATTGTAAATGGTCCGCAAGTAT 18206 Query 164630 TGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAG 164689 | | |||||||| || || || ||||||||| | ||| ||||||| || ||||| | Sbjct 18207 TAGATAAATATGTCGGCGAATCCGAAGCTAATATAAGACGGTTGTTTGCCGAAGCTGAGG 18266 Query 164690 AAGAACAAAAGA 164701 |||| |||||| Sbjct 18267 AAGAGGAAAAGA 18278 Score = 127 bits (140), Expect = 2e-24 Identities = 265/394 (67%), Gaps = 18/394 (5%) Strand=Plus/Plus Query 164723 TACATGTTATTGTTTTTGATGAGATAGATGCTCTTTGCAAAAAACGTGGT---------G 164773 ||||| | ||| |||| ||||| || ||||| |||||||| |||||| | Sbjct 18356 TACATATAATTATTTTCGATGAAATTGATGCCATTTGCAAAGCCCGTGGTTCAGTAGCGG 18415 Query 164774 ATAATATTA---TTCATGATGCAGTGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTAG 164830 ||| | | || || | || |||||||| ||| | ||||||| || || || | Sbjct 18416 GTAACAGCGGAGTCCACGACACTGTAGTTAATCAATTGTTGGCTAAAATCGACGGAGTGG 18475 Query 164831 AATCCTTAAATAATATTTTAATTGTAGGTATGACCAACCGACCTGATTTAATTGATGATG 164890 | || |||||||||||| || | ||||||||||| || | ||| | |||||||| | Sbjct 18476 AGCAATTGAATAATATTTTAGTTATTGGTATGACCAATCGCCGTGACATGATTGATGAGG 18535 Query 164891 CTTTATTACGACCTGGTCGATTAGAATTGAAAATAGAAATAGGATTACCCGACAAAGAAG 164950 ||||| |||| ||||| || || ||| || |||| ||||| | || || || ||| | Sbjct 18536 CTTTACTACGCCCTGGCCGTTTGGAAGTGCAAATGGAAATCAGTTTGCCTAACGAAGTTG 18595 Query 164951 GACGCCTTCAAATTTTAAAAGTTCATGTGGCTAAA---ATGAAATCCTGTGATATATTAT 165007 || | | |||||| |||| |||| | ||| ||| | | ||| | | Sbjct 18596 GAAGAGTACAAATTCTAAATATTCA---CACGAAACGTATGCGCGATTTTAATAAAATTG 18652 Query 165008 CTCCCGATGTAGATTTAAATAAAATAGCTGCCGAAACTAAAAATTATAGTGGTGCTGAAT 165067 || ||||| ||| || |||| |||||| || ||||||| || || ||||||| Sbjct 18653 CTGGAGATGTGGATACGAAAGAAATCGCTGCCCTTACCAAAAATTTCAGCGGCGCTGAAT 18712 Query 165068 TAGAGGGATTAGTAAGAGCCGCTCAATCAACCGC 165101 | || || |||||| | || || ||||| || || Sbjct 18713 TGGAAGGCTTAGTACGTGCTGCCCAATCTACTGC 18746 >seq54 Length=1451896 Score = 123 bits (136), Expect = 3e-23 Identities = 243/351 (69%), Gaps = 20/351 (6%) Strand=Plus/Plus Query 6898 TGAGCAATTAAATATGTTAATAATGCATAAGAAGCTACATTAAAAGGTACACCTAATCCC 6957 || ||||| | | | |||||||||||||| || |||| |||||| || ||||| | ||| Sbjct 132819 TGGGCAATCATACACGTTAATAATGCATACGATGCTATATTAAATGGGACACCCAGCCCC 132878 Query 6958 ATATCTGCTGATCTTTGATAACATTGACAAGATAA---AATATTGTCTATAGCATAAAAT 7014 ||||| || | |||||| |||||| || || | ||||| || |||| ||| Sbjct 132879 ATATCGGCACTGCGCTGATAAAGTTGACATGACAACTCATTATTGGATA---CATAGAAT 132935 Query 7015 TGACACAATACATGACATGGAGGTAAAACAGCCTGATCTATATCAGATGGATTCCAAGCA 7074 || ||| ||| || || ||||| | | |||||| ||||||||||| | Sbjct 132936 TGGGCCAAGCAATGGCAGGGCGGTAAGGCCATTTTTGGTATATCTACTGGATTCCAAG-A 132994 Query 7075 GTCATTAAA--ATACGTCTATCATTTGGATTTGTTTTTAATTTTGTTATAATTATTTGT- 7131 | || ||| ||||||| ||| | |||||||| ||| |||| ||||||| ||| Sbjct 132995 G-GATAAAATCATACGTCGATCTGTGGGATTTGTAGTTA---TTGTCCTAATTATCTGTT 133050 Query 7132 --AATTGATCTATACCCTGACCTT--CATAATTAGTATGACAATTTATATAATTAGCTCC 7187 |||||||| | || | || | |||| || ||||| | ||| | || || Sbjct 133051 TCAATTGATCGACTCCTT--CCGTACCATAGCTATCGCGACAAGTGCGATATTGTGCCCC 133108 Query 7188 AAAATGTCTCCATTGAAACCCATAAATAGGACCTAAATCACCTTCTTCACG 7238 |||||| | ||||||||| || ||||| || || || |||||||||||||| Sbjct 133109 AAAATGGCGCCATTGAAAACCGTAAATTGGCCCCAAGTCACCTTCTTCACG 133159 >seq711 Length=206765 Score = 84.2 bits (92), Expect = 3e-11 Identities = 151/216 (70%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 6825 TTTTATATGAT--CTAAATAAATATGAGCATCTCCTAGCGTATGAATAAATTCACCTGGT 6882 ||||||||||| ||| |||||| | |||||||| || ||| ||||| || | Sbjct 141910 TTTTATATGATTACTATATAAAT--GCACATCTCCTCCTGTCCAAATTAATTCTCCAACT 141853 Query 6883 TTCATATCA-ACAGCTTGAGCAATTAAATATGTTAATAATGCATAAGAAGCTACATTAAA 6941 | | || | ||| | |||| | || |||||||| |||||| ||| | |||||| Sbjct 141852 TGTAATTCGCATTGCT-GTGCAAACATATGCGTTAATAAAGCATAACTAGCAAGATTAAA 141794 Query 6942 AGGTACACCTAATCCCATATCTGCTGATCTTTGATAACATTGACAAGATAAAATATTGTC 7001 ||||| || | ||||| |||||||||||| |||||| ||||| | | | Sbjct 141793 AGGTAATCCAAGAAAAATATCGCATGATCTTTGATATACTTGACATGATAAGGTTTGATT 141734 Query 7002 TATAGCATAAAATTGACACAATACATGACATGGAGG 7037 || | ||||||||||| | |||| |||||| ||||| Sbjct 141733 TACAACATAAAATTGAAATAATATATGACACGGAGG 141698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595842757581600