Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq157 113 2e-20 seq150 111 8e-20 seq329 109 3e-19 seq182 102 4e-17 seq402 100 1e-16 >seq157 Length=919119 Score = 113 bits (124), Expect = 2e-20 Identities = 70/76 (92%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 122317 TGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 122376 Query 11516 TGAGCTAATGGGCCGT 11531 |||||||||||||||| Sbjct 122377 TGAGCTAATGGGCCGT 122392 Score = 109 bits (120), Expect = 3e-19 Identities = 72/79 (91%), Gaps = 1/79 (1%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 125197 TGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 125256 Query 11516 TGAGCTAATGGGCCGTCGA 11534 |||||||||||||| |||| Sbjct 125257 TGAGCTAATGGGCC-TCGA 125274 >seq150 Length=757641 Score = 111 bits (122), Expect = 8e-20 Identities = 77/87 (89%), Gaps = 1/87 (1%) Strand=Plus/Plus Query 11444 AAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 ||||||| | | ||||||||| |||||||||| ||||||||||||||||||||||| Sbjct 441388 AAAAAATTATGTGTGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGA 441447 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| |||||||||||||||||||| Sbjct 441448 CGCTCTAACCAACTGAGCTAATGGGCC 441474 >seq329 Length=365263 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 39878 TGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 39937 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 39938 TGAGCTAATGGGCC 39951 >seq182 Length=406380 Score = 102 bits (112), Expect = 4e-17 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||| ||| |||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 373515 TTGGCCTATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 373574 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 373575 CTGAGCTAATAGGCC 373589 >seq402 Length=224010 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||| ||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 196852 TGGCCTATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 196793 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 196792 TGAGCTAATAGGCC 196779 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261478688136376