Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq394 152 5e-32 seq110 125 6e-24 seq343 118 1e-21 >seq394 Length=301216 Score = 152 bits (168), Expect = 5e-32 Identities = 164/217 (76%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 || |||||||| || | |||||||||||||| | ||||| || || ||| | | Sbjct 217032 CGTAACACCAAATGGAGCGTAGATTCCTTTTGGATATTATAGTCTGACAAGGTGCGGCCA 217091 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||||||| || ||| |||| ||||| | || |||||||||||||| ||||||||| Sbjct 217092 TCTTCCAGCTGCTTACCGGCAAAAATTAAGCGCTGTTGATCTGGAGGAATGCCTTCTTTG 217151 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||||||||| || ||| | | ||| || | | | || || || | |||||| Sbjct 217152 TCTTGAATTTTTGCTTTAACGTTCTCAATAGTATCCGAGGGTTCTACTTCTAAAGTGATG 217211 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 ||||| || || | |||||| |||||||||||||||| Sbjct 217212 GTTTTACCTGTCAAAGTTTTTACAAAGATCTGCATGC 217248 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || | ||| || | || || |||||||| || || || || | ||||||||| Sbjct 217248 CCCCCACGCAAACGTAGGACTAAATGCAAAGTTGACTCTTTCTGTATGTTATAATCCGAA 217307 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | |||||||| || ||||| |||| ||||| | ||||||||||| || Sbjct 217308 AGAGTACGGCCATCCTCCAATTGCTTTCCAGCAAAAATTAAACGCTGCTGATCTGGCGGG 217367 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || ||||| || || | |||||| |||||||| | | |||||||| | || || Sbjct 217368 ATTCCTTCCTTATCTTGAATTTTAGCCTTGACATTCTCAATAGTGTCAGACGGCTCAACC 217427 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | ||||| ||||| ||||| | || ||||| ||||||||||| Sbjct 217428 TCTAAAGTGATAGTTTTGCCAGTCAATGTCTTCACGAAGATCTGCAT 217474 >seq110 Length=875010 Score = 125 bits (138), Expect = 6e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 ||||||||||| || || |||||||| | ||||||||| | ||| ||| ||| Sbjct 86413 ACCAAGTGCAAGGTCGACTCCTTTTGTATGTTATAATCCGATAAAGTCCGCCCATCTTCC 86354 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 | ||||| || | || || || | ||| |||||||||||||| |||||||| || | | Sbjct 86353 AATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCCTGA 86294 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 ||||| |||||||| | | |||||| | | || || || | || || ||||| Sbjct 86293 ATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATAGTTTTG 86234 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||||||||||| ||||| || ||||| Sbjct 86233 CCAGTAAGAGTTTTAACAAAAATTTGCAT 86205 >seq343 Length=430003 Score = 118 bits (130), Expect = 1e-21 Identities = 177/249 (71%), Gaps = 3/249 (1%) Strand=Plus/Plus Query 94764 TTTTAA--AAT-TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCT 94820 |||||| ||| ||| || ||| || | | ||||| ||||| || || || ||||| | Sbjct 48373 TTTTAACAAATATTTGCATTCCACCGCGGAGACGCAATACCAAATGTAATGTGGATTCTT 48432 Query 94821 TTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTA 94880 | || | ||| ||||| || ||| | || |||| ||||||||| ||||||| | Sbjct 48433 TCTGTATGTTGTAATCAGACAACGTGCGGCCGTCTTCCAACTGTTTTCCAGCAAAGATCA 48492 Query 94881 ATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGA 94940 | | || || ||||||||||||||||| ||||| | |||||||| || ||| ||| Sbjct 48493 AACGCTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGGATTTTTGCTTTAACGTTTTCGA 48552 Query 94941 CAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGA 95000 ||| || | || || || | ||||||||||| || || | ||| || ||||| | Sbjct 48553 TAGTATCCGACGATTCTACTTCCAAAGTGATGGTTTTACCGGTCAAAGTCTTAACAAATA 48612 Query 95001 TCTGCATGC 95009 | ||||||| Sbjct 48613 TTTGCATGC 48621 Score = 114 bits (126), Expect = 1e-20 Identities = 138/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| |||||||| | ||||||||||||||| | ||| ||||| || ||| | | Sbjct 45699 CGCAGTACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCAGACAATGTGCGGCCA 45758 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||| ||||| || | || ||||| | || |||||||||||||||||||| ||| Sbjct 45759 TCTTCCAATTGTTTGCCAGCGAAAATTAAACGCTGTTGATCTGGAGGAATACCTTCCTTG 45818 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | |||||||| || ||| ||| ||| || | | || || || | |||||| Sbjct 45819 TCTTGGATTTTTGCTTTAACGTTTTCGATAGTATCCGACGGTTCTACTTCCAAAGTGATG 45878 Query 94973 GTTTTTCC 94980 |||||||| Sbjct 45879 GTTTTTCC 45886 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 ||||| ||||| || || ||||| || | ||||||||| || ||| || ||| Sbjct 57495 ACCAAATGCAAGGTTGACTCCTTCTGAATATTATAATCGGACAAGGTGCGTCCGTCTTCC 57554 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 || || || ||| |||| || || | |||||| ||||||||||||||||||||||| | | Sbjct 57555 AGTTGCTTGCCGGCAAAAATCAAACGTTGCTGGTCTGGAGGAATACCTTCTTTGTCTTGA 57614 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || || || || ||| ||| || | | || || || | ||||| ||||| Sbjct 57615 ATCTTGGCTTTAACATTTTCGATAGTATCTGACGGTTCAACTTCCAAAGTGATAGTTTTG 57674 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| | ||||| || ||||| ||||| Sbjct 57675 CCAGTTAATGTTTTTACGAAGATTTGCAT 57703 Score = 102 bits (112), Expect = 7e-17 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||| ||||| || | || ||||| | || || ||||||||||||||||| || Sbjct 48236 ATCTTCCAATTGTTTGCCAGCGAAAATTAAACGCTGTTGGTCTGGAGGAATACCTTCCTT 48295 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | |||||||| || ||| ||| ||| || | | || || || | ||||| Sbjct 48296 GTCTTGGATTTTTGCTTTAACGTTTTCGATAGTATCCGACGGTTCTACTTCCAAAGTGAT 48355 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||||||||| | |||||| ||||| || ||||| Sbjct 48356 GGTTTTTCCAGTCAAAGTTTTAACAAATATTTGCAT 48391 Score = 82.4 bits (90), Expect = 7e-11 Identities = 163/240 (68%), Gaps = 1/240 (0%) Strand=Plus/Plus Query 94769 AAAT-TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || || || | ||| || || ||||| || | || ||||| || || | Sbjct 48608 AAATATTTGCATGCCACCACGCAAACGTAAAACCAAATGGAGTGTCGATTCTTTCTGAAT 48667 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 ||| || || | ||| | || |||| |||||| || ||||||| || | ||| Sbjct 48668 GTTGTAGTCAGAGAGTGTGCGGCCATTTTCCAACTGTTTGCCAGCAAAGATCAAACGTTG 48727 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 |||||||| || | ||| ||||| || | |||||| | || || | | ||| || Sbjct 48728 TTGATCTGGTGGGACACCCTCTTTATCTTGAATTTTAGTTTTAACATTCTCAATAGTATC 48787 Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | || || || | ||||| ||||||||||| | || ||||| || |||||||| Sbjct 48788 GGATGGCTCAACCTCCAAGGTGATAGTTTTTCCAGTCAATGTCTTCACGAATATCTGCAT 48847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448269200109360