Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_006658.1 Length=30655 Score E Sequences producing significant alignments: (Bits) Value seq79 109 1e-19 seq596 95.1 2e-15 seq245 95.1 2e-15 seq205 93.3 8e-15 >seq79 Length=835794 Score = 109 bits (120), Expect = 1e-19 Identities = 287/431 (67%), Gaps = 9/431 (2%) Strand=Plus/Plus Query 7285 ACATGATCATCATAAATATGCTTCAGATTCATTTCATCTTGACGGAACAGCACGAGAAAG 7344 |||||||||| || |||||| ||| ||||||||||||||| || | || | | Sbjct 375835 ACATGATCATTGTATATATGCCTCACATTCATTTCATCTTGTTTAAATATTACTATCATA 375894 Query 7345 TTTGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATAAGTTTGACAGAGATAGAAG 7404 ||||||||||| | || | || ||||| |||| ||||| ||||| || | ||| ||| Sbjct 375895 TTTGCATTATCACGTATTAAATGTTTGGGAATTCTCGTATATGTTTGGCATAAATAAAAG 375954 Query 7405 CTGTCAACATCCTTGTGTCGACCCATGCAGAAAAAAGCTTTGATGTGATCCTGTTTTTCA 7464 | |||| | || || | |||||||| || || | || || ||||| || Sbjct 375955 CAATCAATGTGTTTATGCCTGCCCATGCAAAAGTAATTCCTTATAGTATTTTGTTTATCG 376014 Query 7465 CAAGCAACATCGTCAAATATCATCAAGGAGTTAGGCTTAGCATCTT---CAGGCTTGATT 7521 || ||||| || |||||||| | || | || || || ||| ||||| |||| Sbjct 376015 CATATCACATCATCGAATATCATTATTGAATGTGGTTTCGC--CTTAGACAGGC-TGATA 376071 Query 7522 ACAGCTTCATGTTCGCTGAATGTGAAGAATCCAATACCATCAATCTGTTTAAGCAGTGTC 7581 || ||||| ||| |||||| || || ||||| | || | | | |||||| Sbjct 376072 ACTTTTTCATTTTCTGAGAATGTAAATAAGTTTATACCCTTTATTGGATCGATGAGTGTC 376131 Query 7582 TCCAG-GAACTGATACTTTGGTTGGTTAAGAGACTTTGAGTAAAGATATATATTCTCAAA 7640 | ||| |||| ||| |||||||| | | ||| ||||| || | || || || | ||| Sbjct 376132 TGCAGATAACT-ATATTTTGGTTGATATAAAGATTTTGAATATATGTAGATGTTTTTAAA 376190 Query 7641 CCTCAAACCGTTTGGATGTACAATAAGAGACAGCAGAGCATTCGTCTTTCCACAGTTTGA 7700 | | || || ||| | | || || | || | | || ||||| ||||| ||||| Sbjct 376191 TTTGAGTCCATTAGGACTTTCTATTAGGCTAATCATAACGTTTGTCTTGCCACAATTTGA 376250 Query 7701 TGG-CCCGCAA 7710 ||| ||| ||| Sbjct 376251 TGGACCCACAA 376261 Score = 84.2 bits (92), Expect = 4e-12 Identities = 281/431 (65%), Gaps = 15/431 (3%) Strand=Plus/Plus Query 7285 ACATGATCATCATAAATATGCTTCAGATTCATTTCATCTTGACGGAACAGCACGAGAAAG 7344 |||||||||| || |||||| ||| ||||||||||||||| || | || | | Sbjct 381442 ACATGATCATTGTATATATGCCTCACATTCATTTCATCTTGCTTAAATATTACTATCATA 381501 Query 7345 TTTGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATAAGTTTGACAGAGATAGAAG 7404 ||||||||||| || | || ||||| |||| | |||||||| | ||| ||| Sbjct 381502 TTTGCATTATCAGGTATTAAATGTTTGGGAATTCTT------GTTTGACATAAATAAAAG 381555 Query 7405 CTGTCAACATCCTTGTGTCGACCCATGCAGAAAAAAGCTTTGATGTGATCCTGTTTTTCA 7464 | |||| | || || | |||||||| || || | || || ||||| ||| Sbjct 381556 CAATCAATGTATTTATGCCTGCCCATGCAAAAGTAATTCCTTATAGCATTTTGTTTATCA 381615 Query 7465 CAAGCAACATCGTCAAATATCATCAAGGAGTTAGGCTTAGCATCTT---CAGGCTTGATT 7521 || ||||| || |||||||| | | | || || || ||| |||||| || Sbjct 381616 CATATCACATCATCGAATATCATTATTAAATGTGGTTTCGC--CTTAGATAGGCTT-ATA 381672 Query 7522 ACAGCTTCATGTTCGCTGAATGTGAAGAATCCAATACCATCAATCTGTTTAAGCAGTGTC 7581 || ||||| ||| |||||| || || ||||| | || | | | ||||| | Sbjct 381673 ACTTTTTCATTTTCTGAGAATGTAAATAAGTTTATACCCTTTATTGGGTCGACCAGTGCC 381732 Query 7582 TCCAGGAACTGATACTTTGGTTGGTTAAGAGACTTTGAGTAAAGATATATATTCTCAAAC 7641 | ||| | |||| |||||||| | | ||| ||||| || || || || || | ||| Sbjct 381733 TGCAGATAACGATATTTTGGTTGATATAAAGATTTTGAATATAGGTAGATGTTTTTAAAT 381792 Query 7642 CTCAAACCGTTTGGATGTACAATAAGAGACAG-CAGAGCATTCGTCTTTCCACAGTTTGA 7700 | | || || ||| | | || | || || | | | || |||| ||||| ||||| Sbjct 381793 TTGAGTCCATTGGGACTTTCTATTA-AGTTAGTGATAACGTTTATCTTGCCACAATTTGA 381851 Query 7701 TGG-CCCGCAA 7710 ||| ||| ||| Sbjct 381852 TGGACCCACAA 381862 >seq596 Length=182224 Score = 95.1 bits (104), Expect = 2e-15 Identities = 280/428 (65%), Gaps = 3/428 (1%) Strand=Plus/Minus Query 7285 ACATGATCATCATAAATATGCTTCAGATTCATTTCATCTTGACGGAACAGCACGAGAAAG 7344 |||||||||| || |||||| ||| |||||||||| |||| |||| || | | Sbjct 22867 ACATGATCATTGTATATATGCCTCACATTCATTTCACCTTGCTTAAACATTACTATCATA 22808 Query 7345 TTTGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATAAGTTTGACAGAGATAGAAG 7404 ||||||||||| | || | || ||||| |||| ||||| |||||||| | ||| ||| Sbjct 22807 TTTGCATTATCACGTATTAAATGTTTGGGAATTCTCGTATATGTTTGACATAAATAAAAG 22748 Query 7405 CTGTCAACATCCTTGTGTCGACCCATGCAGAAAAAAGCTTTGATGTGATCCTGTTTTTCA 7464 | |||| | || || | |||||||| || || | || || ||||| ||| Sbjct 22747 CAATCAATGTGTTTATGCCTGCCCATGCAAAAGTAATTCCTTATAGTATTTTGTTTATCA 22688 Query 7465 CAAGCAACATCGTCAAATATCATCAAGGAGTTAGGCTTAG-CATCTTCAGGCTTGATTAC 7523 || ||||| || | ||| || | || | || || | | | |||||| || || Sbjct 22687 CATATCACATCATCGATTATTATTATTGAATGTGGTTTCGCCCTAGATAGGCTT-ATAAC 22629 Query 7524 AGCTTCATGTTCGCTGAATGTGAAGAATCCAATACCATCAATCTGTTTAAGCAGTGTCTC 7583 ||||| || |||||| || || || || | | | | | ||||| || Sbjct 22628 TTTTTCATTTTTTGAGAATGTAAATAAGTTTATGCCCTTTTTTGGATCGATCAGTGCCTG 22569 Query 7584 CAGGAACTGATACTTTGGTTGGTTAAGAGACTTTGAGTAAAGATATATATTCTCAAACCT 7643 ||| | |||| |||||||| | | ||| ||||| || | || || || | ||| | Sbjct 22568 CAGATAACGATATTTTGGTTGATATAAAGATTTTGAATATATGTAGATGTTTTTAAATTT 22509 Query 7644 CAAACCGTTTGGATGTACAATAAGAGACAGCAGAGCATTCGTCTTTCCACAGTTTGATGG 7703 | || || |||| | | || || | || | | || ||||| ||||| |||||||| Sbjct 22508 GAGTCCATTAGGATTTTCTATTAGGCTAATCATAACGTTTGTCTTGCCACAATTTGATGG 22449 Query 7704 -CCCGCAA 7710 ||| ||| Sbjct 22448 ACCCACAA 22441 >seq245 Length=381971 Score = 95.1 bits (104), Expect = 2e-15 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 7285 ACATGATCATCATAAATATGCTTCAGATTCATTTCATCTTGACGGAACAGCACGAGAAAG 7344 |||||||||| || ||||| ||| |||| |||||||||| ||| | || | | Sbjct 53027 ACATGATCATTGTATATATGTCTCATATTCGTTTCATCTTGTTTGAATATTACTATCATA 53086 Query 7345 TTTGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATAAGTTTGACAGAGATAGAAG 7404 ||||||||||| | |||| || || || |||| ||||| ||||| || | ||| ||| Sbjct 53087 TTTGCATTATCACGTATCAAATGTTTAGGAATTCTCGTATATGTTTGTCATAAATAAAAG 53146 Query 7405 CTGTCAACATCCTTGTGTCGACCCATGCAGAAAAAAGCT-TTGATGTGATCCTGTTTTTC 7463 | |||| | ||||||| ||||||||| || || | ||| || || ||||| | Sbjct 53147 CAATCAATGTGTTTGTGTCTACCCATGCAAAAGTAATTTCTTGTAGT-ATTTTGTTTATT 53205 Query 7464 ACAAGCAACATCGTCAAATATCAT 7487 ||| ||||| || |||||||| Sbjct 53206 ACACATCACATCATCGAATATCAT 53229 >seq205 Length=403621 Score = 93.3 bits (102), Expect = 8e-15 Identities = 283/430 (66%), Gaps = 12/430 (3%) Strand=Plus/Plus Query 7287 ATGATCATCATAAATATGCTTCAGATTCATTTCATCTTGACGGAACAGCACGAGAAAGTT 7346 |||||||| || |||||| ||| ||||||||||||||| || | || | | | Sbjct 350693 ATGATCATTGTATATATGCCTCACATTCATTTCATCTTGTTTAAATATTACTATCATATA 350752 Query 7347 TGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATAAGTTTGACAGAGATAGAAGCT 7406 ||||||||| | || | || ||||| |||| ||||| |||||||| | ||| |||| Sbjct 350753 TGCATTATCACGTATTAAATGTTTGGGGATTCTCGTATATGTTTGACATAAATAAAAGCA 350812 Query 7407 GTCAACATCCTTGTGTCGACCCATGCAGAAAAAAGCTTTGATGTGATCCTGTTTTTCACA 7466 |||| | || |||| ||||||||| || || | || || ||||| || || Sbjct 350813 ATCAATACGTTTATGTCTACCCATGCAAAAGTAATTCCTTATAGTATATTGTTTATCGCA 350872 Query 7467 AGCAACATCGTCAAATATCATCAAGGAGTTAGGCTTAGCATCTTCAGGCTTGA-TTACAG 7525 ||||| || |||||||| | || | | || || ||| || | || | | | Sbjct 350873 TATTACATCATCGAATATCATTATTGAATGTGATTTTGC--CTT--GGATAGACTCATAA 350928 Query 7526 C--TTCATGTTCGCTGAATGTGAAGA--ATCCAATACCATCAATCTGTTTAAGCAGTGTC 7581 | ||||| ||| ||| || || | | |||| | ||| | | || ||||||| Sbjct 350929 CTTTTCATTTTCTGAGAACGTAAATATGTTTACATAC--TTTATCGGATCAATCAGTGTC 350986 Query 7582 TCCAGGAACTGATACTTTGGTTGGTTAAGAGACTTTGAGTAAAGATATATATTCTCAAAC 7641 | ||| | |||| |||||||| | | ||| | || || | || || || | ||| Sbjct 350987 TGCAGATAACGATATTTTGGTTGATATAAAGATATCGAATATATGTAGATGTTTTTAAAA 351046 Query 7642 CTCAAACCGTTTGGATGTACAATAAGAGACAGCAGAGCATTCGTCTTTCCACAGTTTGAT 7701 || | ||| || ||| | | || || | || | |||| ||||| ||||| ||||| Sbjct 351047 CTGAGACCATTAGGACTTTCTATTAGGCTAATCACAACATTTGTCTTGCCACAATTTGAC 351106 Query 7702 GG-CCCGCAA 7710 || ||| ||| Sbjct 351107 GGTCCCACAA 351116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97969832311004