Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020
15-01-15] 3,926 sequences; 380,104,241 total letters
Query= NC_006658.1
Length=30655
Score E
Sequences producing significant alignments: (Bits) Value
seq79 109 1e-19
seq596 95.1 2e-15
seq245 95.1 2e-15
seq205 93.3 8e-15
>seq79
Length=835794
Score = 109 bits (120), Expect = 1e-19
Identities = 287/431 (67%), Gaps = 9/431 (2%)
Strand=Plus/Plus
Query 7285 ACATGATCATCATAAATATGCTTCAGATTCATTTCATCTTGACGGAACAGCACGAGAAAG 7344
|||||||||| || |||||| ||| ||||||||||||||| || | || | |
Sbjct 375835 ACATGATCATTGTATATATGCCTCACATTCATTTCATCTTGTTTAAATATTACTATCATA 375894
Query 7345 TTTGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATAAGTTTGACAGAGATAGAAG 7404
||||||||||| | || | || ||||| |||| ||||| ||||| || | ||| |||
Sbjct 375895 TTTGCATTATCACGTATTAAATGTTTGGGAATTCTCGTATATGTTTGGCATAAATAAAAG 375954
Query 7405 CTGTCAACATCCTTGTGTCGACCCATGCAGAAAAAAGCTTTGATGTGATCCTGTTTTTCA 7464
| |||| | || || | |||||||| || || | || || ||||| ||
Sbjct 375955 CAATCAATGTGTTTATGCCTGCCCATGCAAAAGTAATTCCTTATAGTATTTTGTTTATCG 376014
Query 7465 CAAGCAACATCGTCAAATATCATCAAGGAGTTAGGCTTAGCATCTT---CAGGCTTGATT 7521
|| ||||| || |||||||| | || | || || || ||| ||||| ||||
Sbjct 376015 CATATCACATCATCGAATATCATTATTGAATGTGGTTTCGC--CTTAGACAGGC-TGATA 376071
Query 7522 ACAGCTTCATGTTCGCTGAATGTGAAGAATCCAATACCATCAATCTGTTTAAGCAGTGTC 7581
|| ||||| ||| |||||| || || ||||| | || | | | ||||||
Sbjct 376072 ACTTTTTCATTTTCTGAGAATGTAAATAAGTTTATACCCTTTATTGGATCGATGAGTGTC 376131
Query 7582 TCCAG-GAACTGATACTTTGGTTGGTTAAGAGACTTTGAGTAAAGATATATATTCTCAAA 7640
| ||| |||| ||| |||||||| | | ||| ||||| || | || || || | |||
Sbjct 376132 TGCAGATAACT-ATATTTTGGTTGATATAAAGATTTTGAATATATGTAGATGTTTTTAAA 376190
Query 7641 CCTCAAACCGTTTGGATGTACAATAAGAGACAGCAGAGCATTCGTCTTTCCACAGTTTGA 7700
| | || || ||| | | || || | || | | || ||||| ||||| |||||
Sbjct 376191 TTTGAGTCCATTAGGACTTTCTATTAGGCTAATCATAACGTTTGTCTTGCCACAATTTGA 376250
Query 7701 TGG-CCCGCAA 7710
||| ||| |||
Sbjct 376251 TGGACCCACAA 376261
Score = 84.2 bits (92), Expect = 4e-12
Identities = 281/431 (65%), Gaps = 15/431 (3%)
Strand=Plus/Plus
Query 7285 ACATGATCATCATAAATATGCTTCAGATTCATTTCATCTTGACGGAACAGCACGAGAAAG 7344
|||||||||| || |||||| ||| ||||||||||||||| || | || | |
Sbjct 381442 ACATGATCATTGTATATATGCCTCACATTCATTTCATCTTGCTTAAATATTACTATCATA 381501
Query 7345 TTTGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATAAGTTTGACAGAGATAGAAG 7404
||||||||||| || | || ||||| |||| | |||||||| | ||| |||
Sbjct 381502 TTTGCATTATCAGGTATTAAATGTTTGGGAATTCTT------GTTTGACATAAATAAAAG 381555
Query 7405 CTGTCAACATCCTTGTGTCGACCCATGCAGAAAAAAGCTTTGATGTGATCCTGTTTTTCA 7464
| |||| | || || | |||||||| || || | || || ||||| |||
Sbjct 381556 CAATCAATGTATTTATGCCTGCCCATGCAAAAGTAATTCCTTATAGCATTTTGTTTATCA 381615
Query 7465 CAAGCAACATCGTCAAATATCATCAAGGAGTTAGGCTTAGCATCTT---CAGGCTTGATT 7521
|| ||||| || |||||||| | | | || || || ||| |||||| ||
Sbjct 381616 CATATCACATCATCGAATATCATTATTAAATGTGGTTTCGC--CTTAGATAGGCTT-ATA 381672
Query 7522 ACAGCTTCATGTTCGCTGAATGTGAAGAATCCAATACCATCAATCTGTTTAAGCAGTGTC 7581
|| ||||| ||| |||||| || || ||||| | || | | | ||||| |
Sbjct 381673 ACTTTTTCATTTTCTGAGAATGTAAATAAGTTTATACCCTTTATTGGGTCGACCAGTGCC 381732
Query 7582 TCCAGGAACTGATACTTTGGTTGGTTAAGAGACTTTGAGTAAAGATATATATTCTCAAAC 7641
| ||| | |||| |||||||| | | ||| ||||| || || || || || | |||
Sbjct 381733 TGCAGATAACGATATTTTGGTTGATATAAAGATTTTGAATATAGGTAGATGTTTTTAAAT 381792
Query 7642 CTCAAACCGTTTGGATGTACAATAAGAGACAG-CAGAGCATTCGTCTTTCCACAGTTTGA 7700
| | || || ||| | | || | || || | | | || |||| ||||| |||||
Sbjct 381793 TTGAGTCCATTGGGACTTTCTATTA-AGTTAGTGATAACGTTTATCTTGCCACAATTTGA 381851
Query 7701 TGG-CCCGCAA 7710
||| ||| |||
Sbjct 381852 TGGACCCACAA 381862
>seq596
Length=182224
Score = 95.1 bits (104), Expect = 2e-15
Identities = 280/428 (65%), Gaps = 3/428 (1%)
Strand=Plus/Minus
Query 7285 ACATGATCATCATAAATATGCTTCAGATTCATTTCATCTTGACGGAACAGCACGAGAAAG 7344
|||||||||| || |||||| ||| |||||||||| |||| |||| || | |
Sbjct 22867 ACATGATCATTGTATATATGCCTCACATTCATTTCACCTTGCTTAAACATTACTATCATA 22808
Query 7345 TTTGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATAAGTTTGACAGAGATAGAAG 7404
||||||||||| | || | || ||||| |||| ||||| |||||||| | ||| |||
Sbjct 22807 TTTGCATTATCACGTATTAAATGTTTGGGAATTCTCGTATATGTTTGACATAAATAAAAG 22748
Query 7405 CTGTCAACATCCTTGTGTCGACCCATGCAGAAAAAAGCTTTGATGTGATCCTGTTTTTCA 7464
| |||| | || || | |||||||| || || | || || ||||| |||
Sbjct 22747 CAATCAATGTGTTTATGCCTGCCCATGCAAAAGTAATTCCTTATAGTATTTTGTTTATCA 22688
Query 7465 CAAGCAACATCGTCAAATATCATCAAGGAGTTAGGCTTAG-CATCTTCAGGCTTGATTAC 7523
|| ||||| || | ||| || | || | || || | | | |||||| || ||
Sbjct 22687 CATATCACATCATCGATTATTATTATTGAATGTGGTTTCGCCCTAGATAGGCTT-ATAAC 22629
Query 7524 AGCTTCATGTTCGCTGAATGTGAAGAATCCAATACCATCAATCTGTTTAAGCAGTGTCTC 7583
||||| || |||||| || || || || | | | | | ||||| ||
Sbjct 22628 TTTTTCATTTTTTGAGAATGTAAATAAGTTTATGCCCTTTTTTGGATCGATCAGTGCCTG 22569
Query 7584 CAGGAACTGATACTTTGGTTGGTTAAGAGACTTTGAGTAAAGATATATATTCTCAAACCT 7643
||| | |||| |||||||| | | ||| ||||| || | || || || | ||| |
Sbjct 22568 CAGATAACGATATTTTGGTTGATATAAAGATTTTGAATATATGTAGATGTTTTTAAATTT 22509
Query 7644 CAAACCGTTTGGATGTACAATAAGAGACAGCAGAGCATTCGTCTTTCCACAGTTTGATGG 7703
| || || |||| | | || || | || | | || ||||| ||||| ||||||||
Sbjct 22508 GAGTCCATTAGGATTTTCTATTAGGCTAATCATAACGTTTGTCTTGCCACAATTTGATGG 22449
Query 7704 -CCCGCAA 7710
||| |||
Sbjct 22448 ACCCACAA 22441
>seq245
Length=381971
Score = 95.1 bits (104), Expect = 2e-15
Identities = 145/204 (71%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 7285 ACATGATCATCATAAATATGCTTCAGATTCATTTCATCTTGACGGAACAGCACGAGAAAG 7344
|||||||||| || ||||| ||| |||| |||||||||| ||| | || | |
Sbjct 53027 ACATGATCATTGTATATATGTCTCATATTCGTTTCATCTTGTTTGAATATTACTATCATA 53086
Query 7345 TTTGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATAAGTTTGACAGAGATAGAAG 7404
||||||||||| | |||| || || || |||| ||||| ||||| || | ||| |||
Sbjct 53087 TTTGCATTATCACGTATCAAATGTTTAGGAATTCTCGTATATGTTTGTCATAAATAAAAG 53146
Query 7405 CTGTCAACATCCTTGTGTCGACCCATGCAGAAAAAAGCT-TTGATGTGATCCTGTTTTTC 7463
| |||| | ||||||| ||||||||| || || | ||| || || ||||| |
Sbjct 53147 CAATCAATGTGTTTGTGTCTACCCATGCAAAAGTAATTTCTTGTAGT-ATTTTGTTTATT 53205
Query 7464 ACAAGCAACATCGTCAAATATCAT 7487
||| ||||| || ||||||||
Sbjct 53206 ACACATCACATCATCGAATATCAT 53229
>seq205
Length=403621
Score = 93.3 bits (102), Expect = 8e-15
Identities = 283/430 (66%), Gaps = 12/430 (3%)
Strand=Plus/Plus
Query 7287 ATGATCATCATAAATATGCTTCAGATTCATTTCATCTTGACGGAACAGCACGAGAAAGTT 7346
|||||||| || |||||| ||| ||||||||||||||| || | || | | |
Sbjct 350693 ATGATCATTGTATATATGCCTCACATTCATTTCATCTTGTTTAAATATTACTATCATATA 350752
Query 7347 TGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATAAGTTTGACAGAGATAGAAGCT 7406
||||||||| | || | || ||||| |||| ||||| |||||||| | ||| ||||
Sbjct 350753 TGCATTATCACGTATTAAATGTTTGGGGATTCTCGTATATGTTTGACATAAATAAAAGCA 350812
Query 7407 GTCAACATCCTTGTGTCGACCCATGCAGAAAAAAGCTTTGATGTGATCCTGTTTTTCACA 7466
|||| | || |||| ||||||||| || || | || || ||||| || ||
Sbjct 350813 ATCAATACGTTTATGTCTACCCATGCAAAAGTAATTCCTTATAGTATATTGTTTATCGCA 350872
Query 7467 AGCAACATCGTCAAATATCATCAAGGAGTTAGGCTTAGCATCTTCAGGCTTGA-TTACAG 7525
||||| || |||||||| | || | | || || ||| || | || | | |
Sbjct 350873 TATTACATCATCGAATATCATTATTGAATGTGATTTTGC--CTT--GGATAGACTCATAA 350928
Query 7526 C--TTCATGTTCGCTGAATGTGAAGA--ATCCAATACCATCAATCTGTTTAAGCAGTGTC 7581
| ||||| ||| ||| || || | | |||| | ||| | | || |||||||
Sbjct 350929 CTTTTCATTTTCTGAGAACGTAAATATGTTTACATAC--TTTATCGGATCAATCAGTGTC 350986
Query 7582 TCCAGGAACTGATACTTTGGTTGGTTAAGAGACTTTGAGTAAAGATATATATTCTCAAAC 7641
| ||| | |||| |||||||| | | ||| | || || | || || || | |||
Sbjct 350987 TGCAGATAACGATATTTTGGTTGATATAAAGATATCGAATATATGTAGATGTTTTTAAAA 351046
Query 7642 CTCAAACCGTTTGGATGTACAATAAGAGACAGCAGAGCATTCGTCTTTCCACAGTTTGAT 7701
|| | ||| || ||| | | || || | || | |||| ||||| ||||| |||||
Sbjct 351047 CTGAGACCATTAGGACTTTCTATTAGGCTAATCACAACATTTGTCTTGCCACAATTTGAC 351106
Query 7702 GG-CCCGCAA 7710
|| ||| |||
Sbjct 351107 GGTCCCACAA 351116
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 97969832311004
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