Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_006949.1 Length=46900 Score E Sequences producing significant alignments: (Bits) Value seq861 114 4e-21 >seq861 Length=102403 Score = 114 bits (126), Expect = 4e-21 Identities = 158/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 32903 CCAAGCATTTGCATGGTTCCACTAACGCCAACGATGACTTCGGTAGTGAACCGATTCTGT 32962 || ||||||||||| | ||| ||| ||| || || ||||| ||| | || || || Sbjct 30677 CCGAGCATTTGCATAGCACCATTAATGCCTACAATAACTTCTGTAATATACTTATCTTGA 30736 Query 32963 CCACTTTGGTCCTGCCATTTTCTTGTCCGCAATTTGCCTTCAAGATAAACCTCAGAGCCT 33022 ||| ||||||| |||||||||||||| | || | ||||| | ||| || | ||| ||| Sbjct 30737 CCATTTTGGTCTTGCCATTTTCTTGTTTGTAAGCTCCCTTCGATATATACTTGAGATCCT 30796 Query 33023 TTTCGCAGATACTCGCTGGCAATTTCTGCCAGTTTCCCGCTCATCACCACACGGTGCCAC 33082 ||||| | ||| || | ||| ||||| || | ||| || || || || | |||||| Sbjct 30797 TTTCGTAAATATTCTCCGGCTATTTCAGCTAATTTTCCAAAAATAACTACTCTGTGCCAT 30856 Query 33083 TCCGTCTGCTCCTTTTGCTCGCCAGTATTTTTATCTCGCCA 33123 || || | || || || || ||||||||||| ||||| Sbjct 30857 TCGGTTTTTTCTTTGATTTCTCCGGTATTTTTATCGCGCCA 30897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 149951408751944