Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq158 212 7e-50 >seq158 Length=613782 Score = 212 bits (234), Expect = 7e-50 Identities = 473/709 (67%), Gaps = 10/709 (1%) Strand=Plus/Plus Query 21293 AGTTCTGATAATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTC 21352 |||||| ||| || | ||| || ||| |||||||||||| |||||| ||| | ||| Sbjct 555562 AGTTCTAATAGCAAACGATCGGCAACATATTCTATATATTTACACATACTTTCGCTGTTC 555621 Query 21353 ATACCGATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCT 21412 || || || || | || || | || | ||||||||| |||||| || ||||| Sbjct 555622 ATGCCAATTAAGTCGACTGGTAAGGCCTCTGTCAAAAACTCTTTTTCAATTTTAACGGCA 555681 Query 21413 TCAACAATTATATTTATTATCCTAGATGTACTAGGGGGATACAATAATTGTTTAAACATC 21472 || ||||| | | |||| | | || || | | || ||||||||||| Sbjct 555682 TCTGTTATTATTTCCAAAATCCGTTCTTTGCTCGGTTTTTGTATCAAATGTTTAAACATT 555741 Query 21473 AAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTT 21532 || ||||| ||||| ||||| |||||||| | ||| | ||||||||| || ||| Sbjct 555742 AATACCGCAAATTCACAGTGCAAGCCTTCATCGCGTGATATCATTTCATTAGAGAACGTT 555801 Query 21533 AAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCT-CCTGAAAA 21591 ||||| ||||||| ||| | || |||| ||||||||| || || || ||| || ||| Sbjct 555802 AAACCTGGCATTATTCCACGTTTCTTTAGCCAAAATATCGAAGCGAA-GCTCCCACTAAA 555860 Query 21592 GAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATC 21651 ||| || || || |||||||| || || | | ||||||||| | ||| | || Sbjct 555861 GAATATACCTTCGACGGCAGCGAAAGCTATAACACGTTCACCGAAATTAG---CCGAATG 555917 Query 21652 C---AATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAAT-CAATTGTATCAA 21707 | ||||||| | |||||||| ||||| | |||| |||| ||||| |||| Sbjct 555918 CGATGATATCCAAGCTAGTGCCCATTCCGCCTTCTTCTTAA-CCAATGGCATTGTCTCAA 555976 Query 21708 TAGCTTTTAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNAC 21767 | || || || |||| | ||||| | |||| | || || Sbjct 555977 TGGCATTAAATAGATATTCCTTTTCTTTCTCATCTCTGATATATGTTTCGATAAGTAAAC 556036 Query 21768 TATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCT 21827 |||||||||| || |||| |||||| || || || ||||| || ||||| || | ||| | Sbjct 556037 TATACATTTCCGAGTGTACATTTTCCATGGCAATTTGAAACCCATAAAAGCAACGTGCTT 556096 Query 21828 CTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCAC 21887 | | ||||||||| ||||||||| | || || ||||| || || ||||| Sbjct 556097 CGGTTATTTGAACCTCTTGGGAAAATCGTTCCACTAAATTCTCATTAACAATACCATCGG 556156 Query 21888 TGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTT 21947 || |||||||| ||||| | | | ||||||| |||||| || |||| | Sbjct 556157 ATGCCGCAAAAAAAGCCAAAACGTGTGAAATAAAATGACGTTCGCCATTACTTAACCGAT 556216 Query 21948 TCCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAA 21996 ||||||| | |||||| || | || |||||||| | |||||||| Sbjct 556217 TCCAATCGTCGATATCTTTAGAGAGGTCAACTTCTTCTGCAGTCCAAAA 556265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531874696968240