Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq343 109 5e-19 seq394 105 6e-18 seq961 96.9 3e-15 seq362 96.9 3e-15 seq180 91.5 1e-13 seq502 89.7 5e-13 >seq343 Length=430003 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 ||||||||| | || ||||||||||||||||| ||| | ||||| | ||| | ||| | Sbjct 57706 AAAATGCAAATCTTCGTAAAAACATTAACTGGCAAAACTATCACTTTGGAAGTTGAACCG 57647 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 || || ||||| | || ||| |||||| ||||||||||| || ||||| || Sbjct 57646 TCAGATACTATCGAAAATGTTAAAGCCAAGATTCAAGACAAAGAAGGTATTCCTCCAGAC 57587 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 || ||| | | |||| | |||||| ||||| ||||| | | | | | ||| ||| Sbjct 57586 CAGCAACGTTTGATTTTTGCCGGCAAGCAACTGGAAGACGGACGCACCTTGTCCGATTAT 57527 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || ||||| || || || || | ||| ||||||| Sbjct 57526 AATATTCAGAAGGAGTCAACCTTGCATTTGGTCCT 57492 >seq394 Length=301216 Score = 105 bits (116), Expect = 6e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||||||||| || || || ||| | ||||| | ||| ||||| | Sbjct 217246 ATGCAGATCTTTGTAAAAACTTTGACAGGTAAAACCATCACTTTAGAAGTAGAACCCTCG 217187 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || || || ||| | || ||| ||| ||| ||||||||||| || ||||| |||||| Sbjct 217186 GATACTATTGAGAACGTTAAAGCAAAAATTCAAGACAAAGAAGGCATTCCTCCAGATCAA 217127 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAAC--GTCAGCGACTATA 26946 || | | |||| | ||| || || || ||||||| | | | |||| ||||||| Sbjct 217126 CAGCGCTTAATTTTTGCCGGTAAGCAGCTGGAAGATGGCCGCACCTTGTCA--GACTATA 217069 Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 | || ||||| |||||||| ||||| |||| | | ||| | ||||| Sbjct 217068 ATATCCAAAAGGAATCTACGCTCCATTTGGTGTTACGTCTTCGCGGAGG 217020 >seq961 Length=34630 Score = 96.9 bits (106), Expect = 3e-15 Identities = 335/510 (66%), Gaps = 27/510 (5%) Strand=Plus/Plus Query 147449 ATGCTGATTGACCACTTGATACTCGCCCGACAGAACTCTTCGTACGTACAAATTACTAGT 147508 ||| ||||||||||| | |||| || ||||| || | |||| ||| | || ||| Sbjct 3589 ATGATGATTGACCACGATAAACTCACCAGACAGTACGCGTCGTGTGTAAACGTTTGAAGT 3648 Query 147509 AAACGGCTCGAACGACTCGTTGTTACCTAGAATCTGTGCAGTCGTTGCCGTCGGCATGTA 147568 | ||||| || |||||||||||||| ||||| || ||||| | ||||| ||||| Sbjct 3649 GTATGGCTCAAAAGACTCGTTGTTACCAAGAATTTGAGCAGTAGACGCCGTAGGCATTGG 3708 Query 147569 AGCAATCAATAATGAATTGCGTAAGCCGTGCATAGCCATT--TCTCG--CTTAAGCTCGT 147624 ||| | || || ||||||| || | |||| | || | ||| ||||| | Sbjct 3709 AGCTACCAGCAAAGAATTGC----GCACTCCATAACTTTTAATGTCGTCTTTAAGAGCCG 3764 Query 147625 CCCAGTTCCAAAGATCATTCGATTGGTTAATATTCCACAAATCAAACTGTAAAAGTCCAC 147684 ||| ||||| |||||| | | | | ||| ||||| |||| | || | | || Sbjct 3765 ACCAATTCCATAGATCAGTAG---GCGTTTTATCCCACATATCATATTGAAGGATACCTT 3821 Query 147685 AACTTGCAGGGCTTCCATCGTAAGAATCGTATGTTCCGTGCAGTTTAGCTAGTTCGATAC 147744 ||| | || || || || || | ||||| | |||| | |||| || | ||| || Sbjct 3822 TACTAACTGGACTACCTTCATAGGTTTCGTACGGACCGTACTGTTTGGCCAATTCACAAC 3881 Query 147745 T---TTGACTTAGTGCACCATAATAAATAGTTTCTGAAATCTTTTTATTTAAATCTCTAG 147801 | || || || ||||||||||| || ||||| |||| | ||||||||| | || Sbjct 3882 TAGCTT--CTAAG-GCACCATAATATATTGTTTCAAAAATTTGTTTATTTAAGCGTGCAG 3938 Query 147802 CCTCTTGGCTGTCGTAGGGCATATC-CA--AAATGGCGAACGTATCCGCAAGTCCTTGAA 147858 | || ||| || ||||| ||| | || ||| | || || |||| |||||| | Sbjct 3939 CACTTTCGCTTTCATAGGG-ATAACGCATTAAAATTAGTGCG--TCAGCAAATCCTTGGA 3995 Query 147859 TACCGATACCGATGGGTCGGTGTCTGAAATTCGATGCTTGAGCGCT--AGCCAACGGATA 147916 ||| | ||| || || || || | ||||| || ||| | | | || |||||| Sbjct 3996 CACCTAAACCAATTGGACGATGACGAAAATTAGA--CTTTCTGGTTTCCGACAGCGGATA 4053 Query 147917 AAAATTCAAGTCGATAATTTTATTGAGATT 147946 |||| | ||||| || || ||||| || Sbjct 4054 GTAATTGACATCGATTATCTTGTTGAGGTT 4083 >seq362 Length=381446 Score = 96.9 bits (106), Expect = 3e-15 Identities = 335/510 (66%), Gaps = 27/510 (5%) Strand=Plus/Minus Query 147449 ATGCTGATTGACCACTTGATACTCGCCCGACAGAACTCTTCGTACGTACAAATTACTAGT 147508 ||| ||||||||||| | |||| || ||||| || | |||| ||| | || ||| Sbjct 9145 ATGATGATTGACCACGATAAACTCACCAGACAGTACGCGTCGTGTGTAAACGTTTGAAGT 9086 Query 147509 AAACGGCTCGAACGACTCGTTGTTACCTAGAATCTGTGCAGTCGTTGCCGTCGGCATGTA 147568 | ||||| || |||||||||||||| ||||| || ||||| | ||||| ||||| Sbjct 9085 GTATGGCTCAAAAGACTCGTTGTTACCAAGAATTTGAGCAGTAGACGCCGTAGGCATTGG 9026 Query 147569 AGCAATCAATAATGAATTGCGTAAGCCGTGCATAGCCATT--TCTCG--CTTAAGCTCGT 147624 ||| | || || ||||||| || | |||| | || | ||| ||||| | Sbjct 9025 AGCTACCAGCAAAGAATTGC----GCACTCCATAACTTTTAATGTCGTCTTTAAGAGCCG 8970 Query 147625 CCCAGTTCCAAAGATCATTCGATTGGTTAATATTCCACAAATCAAACTGTAAAAGTCCAC 147684 ||| ||||| |||||| | | | | ||| ||||| |||| | || | | || Sbjct 8969 ACCAATTCCATAGATCAGTAG---GCGTTTTATCCCACATATCATATTGAAGGATACCTT 8913 Query 147685 AACTTGCAGGGCTTCCATCGTAAGAATCGTATGTTCCGTGCAGTTTAGCTAGTTCGATAC 147744 ||| | || || || || || | ||||| | |||| | |||| || | ||| || Sbjct 8912 TACTAACTGGACTACCTTCATAGGTTTCGTACGGACCGTACTGTTTGGCCAATTCACAAC 8853 Query 147745 T---TTGACTTAGTGCACCATAATAAATAGTTTCTGAAATCTTTTTATTTAAATCTCTAG 147801 | || || || ||||||||||| || ||||| |||| | ||||||||| | || Sbjct 8852 TAGCTT--CTAAG-GCACCATAATATATTGTTTCAAAAATTTGTTTATTTAAGCGTGCAG 8796 Query 147802 CCTCTTGGCTGTCGTAGGGCATATC-CA--AAATGGCGAACGTATCCGCAAGTCCTTGAA 147858 | || ||| || ||||| ||| | || ||| | || || |||| |||||| | Sbjct 8795 CACTTTCGCTTTCATAGGG-ATAACGCATTAAAATTAGTGCG--TCAGCAAATCCTTGGA 8739 Query 147859 TACCGATACCGATGGGTCGGTGTCTGAAATTCGATGCTTGAGCGCT--AGCCAACGGATA 147916 ||| | ||| || || || || | ||||| || ||| | | | || |||||| Sbjct 8738 CACCTAAACCAATTGGACGATGACGAAAATTAGA--CTTTCTGGTTTCCGACAGCGGATA 8681 Query 147917 AAAATTCAAGTCGATAATTTTATTGAGATT 147946 |||| | ||||| || || ||||| || Sbjct 8680 GTAATTGACATCGATTATCTTGTTGAGGTT 8651 >seq180 Length=539930 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 26765 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATC 26824 ||| ||||| | ||||||||||| |||| || || | ||||| | || | ||| | Sbjct 121606 CAATATGCAGATTTTTGTAAAAACCCTAACGGGCAAGACCATCACTCTTGAGGTCGAACC 121547 Query 26825 AAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGA 26884 ||||| ||||| | || ||| |||||| |||||||| || || || ||||| Sbjct 121546 CTCGGACACTATCGAAAATGTAAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCCGA 121487 Query 26885 TCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTA 26944 || ||| || | |||| || || || ||| | ||||||| | | | | ||| || Sbjct 121486 CCAGCAACGATTGATTTTCGCTGGAAAGCAATTGGAAGATGGTCGCACATTGTCCGATTA 121427 Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGT 26977 ||| |||||||||||||| || | ||||| || Sbjct 121426 TAATATTCAAAAAGAATCCACATTACATCTTGT 121394 >seq502 Length=252103 Score = 89.7 bits (98), Expect = 5e-13 Identities = 155/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 71642 TATAGTTTATTGCAATTCGAGCATAATCAAACGCATGATGAACTATGGAATGCTGCTCAG 71701 ||||| || | |||||||||| | || || ||||| | ||||| | ||||| Sbjct 236403 TATAGCTTGGAGGAATTCGAGCAGGCCCGTACCCACGATGACTTGTGGAACTCAGCTCAA 236344 Query 71702 CGACAGCT-ACGCAATGAGGGTAAAATTCACGGATACCTACGCATGTACTGGGCCAAAAA 71760 | || | | || | ||||||||||| ||||| | | || ||||| ||||| ||||| Sbjct 236343 CTGCAATTGATGCGA-GAGGGTAAAATGCACGGTTTTTTGCGTATGTATTGGGCTAAAAA 236285 Query 71761 GATTCTCGAGTGGACTCAAACTCCCGAGCAGGCGCTCGAGTATTCTATTTATCTAAACGA 71820 |||| | || ||| || ||| || || | || | || | |||| | | |||| || Sbjct 236284 GATTTTAGAATGGTCTAAAAGCCCGGAAGACGCTTTGGAATTTTCTCTACTTTTAAATGA 236225 Query 71821 TAGATACAGTCTCGACGGTCGCGATCCTAACGGTTATGTCGGT 71863 |||||| ||| | || || ||||| ||||||||||||||| Sbjct 236224 TAGATATAGTTTGGATGGAACGGATCCCAACGGTTATGTCGGT 236182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478638909642720