Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq394 116 3e-21 seq180 113 4e-20 seq343 107 2e-18 seq110 100 2e-16 >seq394 Length=301216 Score = 116 bits (128), Expect = 3e-21 Identities = 156/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||||||||| || || || ||| | || || | ||||| || || Sbjct 217246 ATGCAGATCTTTGTAAAAACTTTGACAGGTAAAACCATCACTTTAGAAGTAGAACCCTCG 217187 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || ||| | || ||| ||| ||| |||||||||||||| ||||| |||||| Sbjct 217186 GATACTATTGAGAACGTTAAAGCAAAAATTCAAGACAAAGAAGGCATTCCTCCAGATCAA 217127 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAAC--GTCAGCGATTATA 24168 ||| | | |||| | ||| ||||| || ||||||| | | | | |||| || |||| Sbjct 217126 CAGCGCTTAATTTTTGCCGGTAAGCAGCTGGAAGATGGCCGCACCTTGTCA--GACTATA 217069 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTA 24203 | || ||||| |||||||| | ||||| |||||| Sbjct 217068 ATATCCAAAAGGAATCTACGCTCCATTTGGTGTTA 217034 >seq180 Length=539930 Score = 113 bits (124), Expect = 4e-20 Identities = 164/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||| ||||| | ||||||||||| |||| || || | || || | || ||||| | Sbjct 121606 CAATATGCAGATTTTTGTAAAAACCCTAACGGGCAAGACCATCACTCTTGAGGTCGAACC 121547 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 | ||||| ||||| | || ||| |||||| |||||||| || || || ||||| Sbjct 121546 CTCGGACACTATCGAAAATGTAAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCCGA 121487 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 || || || |||||| || || |||||| | ||||||| | | | |||||| Sbjct 121486 CCAGCAACGATTGATTTTCGCTGGAAAGCAATTGGAAGATGGTCGCACATTGTCCGATTA 121427 Query 24167 TAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||| |||||||||||||| ||| | ||| | ||||| | ||| |||| ||| Sbjct 121426 TAATATTCAAAAAGAATCCACATTACATCTTGTGTTGCGTTTGCGAGGTGGA 121375 >seq343 Length=430003 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 ||||||||| | || ||||||||||||||||| ||| | || || | ||||| || | Sbjct 57706 AAAATGCAAATCTTCGTAAAAACATTAACTGGCAAAACTATCACTTTGGAAGTTGAACCG 57647 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 || || ||||| | || ||| |||||| ||||||||||| || ||||| || Sbjct 57646 TCAGATACTATCGAAAATGTTAAAGCCAAGATTCAAGACAAAGAAGGTATTCCTCCAGAC 57587 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 || || | |||||| | |||||||||||| ||||| | | | | | ||||||| Sbjct 57586 CAGCAACGTTTGATTTTTGCCGGCAAGCAACTGGAAGACGGACGCACCTTGTCCGATTAT 57527 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGT 24199 || ||||| || || || || | ||||| || Sbjct 57526 AATATTCAGAAGGAGTCAACCTTGCATTTGGT 57495 >seq110 Length=875010 Score = 100 bits (110), Expect = 2e-16 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 23972 TACTTTTTAGCCAAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTAC 24031 || ||||||| | ||||||||| | ||||| ||||| | ||||| ||| | ||||| Sbjct 86186 TAATTTTTAGAATATAAAAATGCAAATTTTTGTTAAAACTCTTACTGGCAAAACTATTAC 86245 Query 24032 CATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGA 24091 | ||||| ||| | |||||| || || | ||||| || ||| || ||||| Sbjct 86246 TTTGGAAGTTGAGCCTTCCGACACTATTGAAAATGTCAAGGCCAAAATTCAGGATAAAGA 86305 Query 24092 AGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAG 24151 |||||| ||||| |||||||| | |||||| || || || ||| | ||||||| | Sbjct 86306 AGGCATTCCTCCAGATCAACAACGTTTGATTTTCGCTGGTAAACAATTGGAAGATGGGCG 86365 Query 24152 AAACGTCAGC-GATTATAACATTCAAAAAGAATCTAC 24187 || | | | ||||||||||| ||||| || || || Sbjct 86366 -GACTTTATCGGATTATAACATACAAAAGGAGTCGAC 86401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429915428368530