Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq110 107 2e-18 seq180 105 6e-18 >seq110 Length=875010 Score = 107 bits (118), Expect = 2e-18 Identities = 145/202 (72%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 115281 TAAAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGT 115340 ||||||||||||||||||| ||||| || || || ||||| ||||| | ||| ||| Sbjct 86200 TAAAAATGCAAATTTTTGTTAAAACTCTTACTGGCAAAACTATTACTTTGGAAGTTGAGC 86259 Query 115341 CCAGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTG 115400 | ||||||| ||| | | || || |||||| |||||||||||| | || | Sbjct 86260 CTTCCGACACTATTGAAAATGTCAAGGCCAAAATTCAGGATAAAGAAGGCATTCCTCCAG 86319 Query 115401 ATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATT 115460 |||| ||| | | |||| || || |||||||| ||||||| || | | |||| Sbjct 86320 ATCAACAACGTTTGATTTTCGCTGGTAAACAATTGGAAGATGGGCGGACTTTATCGGATT 86379 Query 115461 ATAACATTCAAAAAGAGTCTAC 115482 ||||||| ||||| ||||| || Sbjct 86380 ATAACATACAAAAGGAGTCGAC 86401 >seq180 Length=539930 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 || ||||| |||||||| ||||| || ||||| || ||||| || | || || || Sbjct 121605 AATATGCAGATTTTTGTAAAAACCCTAACGGGCAAGACCATCACTCTTGAGGTCGAACCC 121546 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 |||||| | | | | |||||| || ||| || ||||| || | || || Sbjct 121545 TCGGACACTATCGAAAATGTAAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCCGAC 121486 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 |||||| || | |||| || || || ||||| ||||||| || || |||||||| Sbjct 121485 CAGCAACGATTGATTTTCGCTGGAAAGCAATTGGAAGATGGTCGCACATTGTCCGATTAT 121426 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGA 115513 || ||||||||||| || || ||||| | |||||| | |||||||| ||| Sbjct 121425 AATATTCAAAAAGAATCCACATTACATCTTGTGTTGCGTTTGCGAGGTGGA 121375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425323648087120