Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq110 95.1 1e-14 seq394 93.3 3e-14 seq343 84.2 2e-11 >seq110 Length=875010 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 ||||||| |||| || ||||||||||||||||| || || | | || | || Sbjct 86416 AGTACCAAGTGCAAGGTCGACTCCTTTTGTATGTTATAATCCGATAAAGTCCGCCCATCT 86357 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 ||||||||||| || || |||| | || ||||| || ||| | ||| ||||| || Sbjct 86356 TCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCC 86297 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 ||||| ||| || | | | ||||||| ||||| ||||| || || ||| Sbjct 86296 TGAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATAGTT 86237 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 || || || || ||||| |||||||| |||||||| Sbjct 86236 TTGCCAGTAAGAGTTTTAACAAAAATTTGCATTTT 86202 >seq394 Length=301216 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | | |||| ||| ||||| || |||||||| || || ||||| | | Sbjct 217020 CCTCCGCGAAGACGTAACACCAAATGGAGCGTAGATTCCTTTTGGATATTATAGTCTGAC 217079 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | || |||| || || || ||| |||| | |||||||| || ||| Sbjct 217080 AAGGTGCGGCCATCTTCCAGCTGCTTACCGGCAAAAATTAAGCGCTGTTGATCTGGAGGA 217139 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCAC-AGTGTCGCCGGGCTCCGT 16887 | ||| |||||||| ||||| ||||| | | | || ||| || ||| || Sbjct 217140 ATGCCTTCTTTGTCTTGAATTTT-TGCTTTAACGTTCTCAATAGTATCCGAGGGTTCTAC 217198 Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||| | ||||||||||| || |||| ||||| ||||| |||||||| Sbjct 217199 TTCTAAAGTGATGGTTTTACCTGTCAAAGTTTTTACAAAGATCTGCAT 217246 >seq343 Length=430003 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/202 (70%), Gaps = 4/202 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | |||||||| || || || || ||||||||||||||||| || | | Sbjct 45687 CCTCCGCGGAGACGCAGTACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCAGAC 45746 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | || |||||||||||||| || |||| | |||||||| || ||| Sbjct 45747 AATGTGCGGCCATCTTCCAATTGTTTGCCAGCGAAAATTAAACGCTGTTGATCTGGAGGA 45806 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || || ||||| || |||||| || || | | | ||| || || || Sbjct 45807 ATACCTTCCTTGTCTTGGATTTTTGCT--TTAACGTTTTCGATAGTATCCGACGGTTCTA 45864 Query 16887 TTTCCACGGTGATGGTTTTTCC 16908 ||||| |||||||||||||| Sbjct 45865 CTTCCAAAGTGATGGTTTTTCC 45886 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | || ||||| ||| | ||||| || || ||||||||||| || | | Sbjct 48393 CCACCGCGGAGACGCAATACCAAATGTAATGTGGATTCTTTCTGTATGTTGTAATCAGAC 48452 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | |||| ||||| ||||| || ||| | || | ||||||||||| ||| Sbjct 48453 AACGTGCGGCCGTCTTCCAACTGTTTTCCAGCAAAGATCAAACGCTGTTGGTCTGGAGGA 48512 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || || ||||| || |||||| || || | | | ||| || | || Sbjct 48513 ATACCTTCCTTGTCTTGGATTTTTGCT--TTAACGTTTTCGATAGTATCCGACGATTCTA 48570 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| ||||||||||| ||||||| || || ||||| || ||||| Sbjct 48571 CTTCCAAAGTGATGGTTTTACCGGTCAAAGTCTTAACAAATATTTGCAT 48619 Score = 82.4 bits (90), Expect = 6e-11 Identities = 132/188 (70%), Gaps = 4/188 (2%) Strand=Plus/Plus Query 16751 TGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGC 16810 ||||||||||| || | || || | | || |||||||||||||| || |||| | Sbjct 48207 TGTATGTTGTAATCAGACAATGTGCGGCCATCTTCCAATTGTTTGCCAGCGAAAATTAAA 48266 Query 16811 CGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCA 16868 ||||||||||| ||| | || || ||||| || |||||| || || | | | Sbjct 48267 CGCTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGGATTTTTGCT--TTAACGTTTTCGA 48324 Query 16869 CAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAA 16928 ||| || || || ||||| |||||||||||||| |||| ||||| ||||| | Sbjct 48325 TAGTATCCGACGGTTCTACTTCCAAAGTGATGGTTTTTCCAGTCAAAGTTTTAACAAATA 48384 Query 16929 TCTGCATT 16936 | |||||| Sbjct 48385 TTTGCATT 48392 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405068617298740