Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq343 132 3e-26 seq394 131 1e-25 seq198 116 2e-21 seq682 113 3e-20 seq833 109 4e-19 seq110 109 4e-19 seq180 104 2e-17 >seq343 Length=430003 Score = 132 bits (146), Expect = 3e-26 Identities = 174/241 (72%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | || ||| | |||||||| | || |||||| |||||||| ||||| | Sbjct 57475 TACCACCGCGCAGACGTAGGACCAAATGCAAGGTTGACTCCTTCTGAATATTATAATCGG 57534 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| ||| |||| || | ||| || |||||||| || | ||||| || || | | Sbjct 57535 ACAAGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCAAAAATCAAACGTTGCTGGTCTGGAG 57594 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||||||||| ||| || || ||||| | || ||||||| ||||| Sbjct 57595 GAATACCTTCTTTGTCTTGAATCTTGGCTTTAACATTTTCGATAGTATCTGACGGTTCAA 57654 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTTTACAAGC 38328 |||| || || |||||||| || || || ||||| ||||| || ||||| ||||| || | Sbjct 57655 CTTCCAAAGTGATAGTTTTGCCAGTTAATGTTTTTACGAAGATTTGCATTTTTTAAAATC 57714 Query 38329 T 38329 | Sbjct 57715 T 57715 Score = 118 bits (130), Expect = 7e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | |||||| || |||||||| || || || || ||||| ||||| ||||| Sbjct 48621 CCACCACGCAAACGTAAAACCAAATGGAGTGTCGATTCTTTCTGAATGTTGTAGTCAGAG 48680 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || | | || || ||||| || ||||| || | ||||||||||| | ||| Sbjct 48681 AGTGTGCGGCCATTTTCCAACTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGGG 48740 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 || || ||||| || |||||| || ||||||| | |||||| ||||| Sbjct 48741 ACACCCTCTTTATCTTGAATTTTAGTTTTAACATTCTCAATAGTATCGGATGGCTCAACC 48800 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || || || |||||||| || ||||| || ||||||||||||||||| || Sbjct 48801 TCCAAGGTGATAGTTTTTCCAGTCAATGTCTTCACGAATATCTGCATTTT 48850 Score = 114 bits (126), Expect = 9e-21 Identities = 168/234 (72%), Gaps = 3/234 (1%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||| | | |||||| |||||||| | ||| || || || || ||||||| Sbjct 48389 CATT-CCACCGCGGAGACGCAATACCAAATGTAATGTGGATTCTTTCTGTATGTTGTAAT 48447 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 ||||||| || |||| || || |||||||| ||||| || | || ||||| || | Sbjct 48448 CAGACAACGTGCGGCCGTCTTCCAACTGTTTTCCAGCAAAGATCAAACGCTGTTGGTCTG 48507 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCAC-TT 38264 || | ||||| ||||| |||||| || || || | || |||||| | || | Sbjct 48508 GAGGAATACCTTCCTTGTCTTGGATTTTTGCTTTAACGTTTTCGATAGTATC-CGACGAT 48566 Query 38265 TCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || ||||| || || || |||||||| ||||| || || || ||||| |||||| Sbjct 48567 TCTACTTCCAAAGTGATGGTTTTACCGGTCAAAGTCTTAACAAATATTTGCATG 48620 Score = 111 bits (122), Expect = 1e-19 Identities = 120/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | |||||| | |||||||| | || |||||| |||||||||||||| | Sbjct 54240 TACCACCGCGCAAACGTAGGACCAAATGCAAGGTTGACTCCTTCTGAATATTGTAATCGG 54299 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| ||| |||| || | |||||| |||||||| || | ||||||||||| | || Sbjct 54300 ACAAGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCAAAAATCAAACGTTGTTGATCTGGGG 54359 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCT 38247 ||| ||||| || || |||||| ||| ||||||| Sbjct 54360 GGATTCCTTCCTTATCTTGAATTTTAGCCTTGACATTCT 54398 Score = 93.3 bits (102), Expect = 3e-14 Identities = 136/190 (72%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 38102 ACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTC 38161 ||||| ||||| |||||||| |||||||| || |||||||||||||| || | Sbjct 45698 ACGCAGTACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCAGACAATGTGCGGCC 45757 Query 38162 GTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTT 38221 || || |||||||| || || || |||| || |||||||| | || | ||||| || Sbjct 45758 ATCTTCCAATTGTTTGCCAGCGAAAATTAAACGCTGTTGATCTGGAGGAATACCTTCCTT 45817 Query 38222 GTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCAC-TTTCAACTTCTAATGTAA 38280 ||| |||||| || || || | || |||||| | || ||| ||||| || || | Sbjct 45818 GTCTTGGATTTTTGCTTTAACGTTTTCGATAGTATC-CGACGGTTCTACTTCCAAAGTGA 45876 Query 38281 TAGTTTTACC 38290 | ||||| || Sbjct 45877 TGGTTTTTCC 45886 Score = 89.7 bits (98), Expect = 3e-13 Identities = 133/186 (72%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 38133 TGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGG 38192 || || |||||||||||||| || | || || |||||||| || || || |||| Sbjct 48207 TGTATGTTGTAATCAGACAATGTGCGGCCATCTTCCAATTGTTTGCCAGCGAAAATTAAA 48266 Query 38193 CGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACA 38252 || ||||| || | || | ||||| ||||| |||||| || || || | || | Sbjct 48267 CGCTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGGATTTTTGCTTTAACGTTTTCGATA 48326 Query 38253 GTATCTCCAC-TTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATAT 38311 ||||| | || ||| ||||| || || || ||||| || ||||| ||||| || ||||| Sbjct 48327 GTATC-CGACGGTTCTACTTCCAAAGTGATGGTTTTTCCAGTCAAAGTTTTAACAAATAT 48385 Query 38312 CTGCAT 38317 ||||| Sbjct 48386 TTGCAT 48391 >seq394 Length=301216 Score = 131 bits (144), Expect = 1e-25 Identities = 159/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 38102 ACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTC 38161 ||| ||||||||||| || || |||||||| ||||| || || ||||| || | Sbjct 217031 ACGTAACACCAAATGGAGCGTAGATTCCTTTTGGATATTATAGTCTGACAAGGTGCGGCC 217090 Query 38162 GTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTT 38221 || || | || || |||||||| |||| ||| |||||||| | || | ||||||||| Sbjct 217091 ATCTTCCAGCTGCTTACCGGCAAAAATTAAGCGCTGTTGATCTGGAGGAATGCCTTCTTT 217150 Query 38222 GTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAAT 38281 ||| ||||||| || || |||| | |||||| ||| |||||||| || || Sbjct 217151 GTCTTGAATTTTTGCTTTAACGTTCTCAATAGTATCCGAGGGTTCTACTTCTAAAGTGAT 217210 Query 38282 AGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 |||||||| ||||| ||||| || || ||||||||| Sbjct 217211 GGTTTTACCTGTCAAAGTTTTTACAAAGATCTGCATG 217247 >seq198 Length=746232 Score = 116 bits (128), Expect = 2e-21 Identities = 86/99 (87%), Gaps = 6/99 (6%) Strand=Plus/Plus Query 25898 TAATAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATC 25952 ||||| ||||||||| ||||||||||||||| |||||||||||||||| |||| Sbjct 122080 TAATA-GCCCGTTCCTTTGGCTGTGGTTTCGTTAGATAGTAGATAGGGACAGAAAGAATC 122138 Query 25953 TCGTTAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 ||||| |||| |||||||||||||||||||||||||||| Sbjct 122139 TCGTTGATCCATTCATGCGCGTCACTAATTAGATGACGA 122177 >seq682 Length=107764 Score = 113 bits (124), Expect = 3e-20 Identities = 142/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 6174 AACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCC 6233 || || || |||||||| | ||| ||||| || |||||||||||||| | ||| Sbjct 32573 AATGTGAACCGTAATGTTACAGACATTTTCTATCGGTACAAAATGCCGCGTTTACAAGCC 32514 Query 6234 AAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCT 6293 || ||||| ||||| || || || |||||||| || || || || ||| | ||||| || Sbjct 32513 AAAGTCGAAGGTAAAGGCAATGGCATTAAAACGGTTATAGTTAATATGGCCGAAGTGGCA 32454 Query 6294 AAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCT 6353 || | ||||| || ||||| || || || ||||| || || |||||| | || ||| Sbjct 32453 CGAGCCATAGGACGACCAGCCACTTATCCAACCAAATACTTTGGTTGCGAATTGGGTGCT 32394 Query 6354 CAGACGCAGTTTGAT 6368 || || || |||||| Sbjct 32393 CAAACTCAATTTGAT 32379 Score = 89.7 bits (98), Expect = 3e-13 Identities = 120/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 6375 AACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGAC 6434 |||||||| ||||| ||||| || || || || | || || | || || | |||||| Sbjct 32281 AACGAGCGTTTCATTGTTAATGGCTCCCACGACGCAGCTAAATTACAAGATCTCCTTGAC 32222 Query 6435 GGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTATT 6494 || ||||| ||||||||||| | || | ||||||||||| ||||| || || |||| Sbjct 32221 GGTTTTATACGCAAGTTTGTCTTATGCCCTGAATGCGATAATCCGGAAACTGATCTTACA 32162 Query 6495 GTGTCTACCAAGAGAAACACCATCTCTCAGGGCTGCAAAGCGTGCGG 6541 || || | |||| | || || || ||| || ||||| ||||| Sbjct 32161 GTTTCAGCTAAGAATCAAACTATATCGCAGTCTTGTAAAGCATGCGG 32115 >seq833 Length=273397 Score = 109 bits (120), Expect = 4e-19 Identities = 81/95 (85%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 || ||||||||||||| ||||||||||||||||||||| ||||| ||| ||| Sbjct 51308 AACCCCGTTCCCTTGGATGTGGTTTCGCTAGATAGTAGGTAGGGACAGAAAGAATGTCGA 51367 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 51368 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 51402 >seq110 Length=875010 Score = 109 bits (120), Expect = 4e-19 Identities = 164/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||| | ||||| || | || ||||||||| || || ||||| | Sbjct 86433 TACCACCACGGAGACGAAGTACCAAGTGCAAGGTCGACTCCTTTTGTATGTTATAATCCG 86374 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | ||| || | || || |||||||| || || || || | ||||||||||| | | Sbjct 86373 ATAAAGTCCGCCCATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGAG 86314 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||||||| ||| |||||| ||| ||||| | | ||| || | |||| Sbjct 86313 GAATGCCTTCTTTATCCTGAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAA 86254 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 |||| || ||||||||||| || || | ||||| || || || ||||| ||| Sbjct 86253 CTTCCAAAGTAATAGTTTTGCCAGTAAGAGTTTTAACAAAAATTTGCATTTTT 86201 >seq180 Length=539930 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||||| |||||||||||| | ||| | ||| || ||||||||||| ||||| ||| Sbjct 121376 CCACCTCGCAAACGCAACACAAGATGTAATGTGGATTCTTTTTGAATATTATAATCGGAC 121435 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 || || | || || ||||| ||||| || || || | ||||| || |||| || Sbjct 121436 AATGTGCGACCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGGTGGA 121495 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | || ||||||||| ||| || || ||||| | || ||| || ||| || Sbjct 121496 ATTCCCTCTTTGTCCTGAATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGACC 121555 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || | || || || || ||||| | |||||| || || |||||||| || Sbjct 121556 TCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCATATT 121605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334931173404506