Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq343 168 6e-37 seq394 156 4e-33 seq180 132 4e-26 >seq343 Length=430003 Score = 168 bits (186), Expect = 6e-37 Identities = 165/210 (79%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||||||||| |||||||||||||||||| ||||||| | ||||| || ||||| Sbjct 48619 ATGCAAATATTTGTTAAGACTTTGACCGGTAAAACCATCACTTTGGAAGTAGAATCGTCG 48560 Query 25059 GACACTATCGAGT-CACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || |||||||| | | ||||||||| || ||||| ||||| ||||| || ||||| Sbjct 48559 GATACTATCGAAAACGTTAAAGCAAAAATCCAA-GACAAGGAAGGTATTCCTCCAGACCA 48501 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||||| | || ||||| || ||||| || ||||| | ||||| || |||||||| Sbjct 48500 ACAGCGTTTGATCTTTGCTGGAAAACAGTTGGAAGACGGCCGCACGTTGTCTGATTACAA 48441 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGT 25207 || || ||||||||||| ||||||| || Sbjct 48440 CATACAGAAAGAATCCACATTACATTTGGT 48411 Score = 141 bits (156), Expect = 8e-29 Identities = 145/187 (78%), Gaps = 2/187 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||||||||| || |||||||| || ||| ||||||| | ||||| || |||| Sbjct 48392 AATGCAAATATTTGTTAAAACTTTGACTGGAAAAACCATCACTTTGGAAGTAGAACCGTC 48333 Query 25058 TGACACTATCGAGT-CACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 || |||||||| | | ||||||||| || ||||| ||||| ||||| || |||| Sbjct 48332 GGATACTATCGAAAACGTTAAAGCAAAAATCCAA-GACAAGGAAGGTATTCCTCCAGACC 48274 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 ||||||| | ||||| || ||||||||||| ||||||| ||||| || ||||||| Sbjct 48273 AACAGCGTTTAATTTTCGCTGGCAAACAATTGGAAGATGGCCGCACATTGTCTGATTACA 48214 Query 25177 ATATTCA 25183 | || || Sbjct 48213 ACATACA 48207 Score = 127 bits (140), Expect = 2e-24 Identities = 162/220 (74%), Gaps = 6/220 (3%) Strand=Plus/Minus Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054 || ||||||||| || ||||| || || || || ||| | ||||| | ||||| || | Sbjct 57707 AAAAATGCAAATCTTCGTAAAAACATTAACTGGCAAAACTATCACTTTGGAAGTTGAACC 57648 Query 25055 GTCTGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACC 25111 ||| || |||||||| | || |||| || | ||| ||||||||||| ||||| || Sbjct 57647 GTCAGATACTATCGAA--AATGTTAAAGCCAAGATTCAA-GACAAAGAAGGTATTCCTCC 57591 Query 25112 TGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGA 25171 ||||| || || | |||||||||||||| ||| | ||||| | ||||| || ||| Sbjct 57590 AGACCAGCAACGTTTGATTTTTGCCGGCAAGCAACTGGAAGACGGACGCACCTTGTCCGA 57531 Query 25172 TTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 ||| |||||||| || || || || | ||||| || ||| Sbjct 57530 TTATAATATTCAGAAGGAGTCAACCTTGCATTTGGTCCTA 57491 Score = 116 bits (128), Expect = 3e-21 Identities = 139/186 (75%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 25026 GGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGT-CACTGAAGCAAAA 25084 || ||| ||||||| | ||||| || |||| || |||||||| | | |||||||| Sbjct 45886 GGAAAAACCATCACTTTGGAAGTAGAACCGTCGGATACTATCGAAAACGTTAAAGCAAAA 45827 Query 25085 AATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACA 25144 | || ||||| ||||| ||||| || || |||||||| | ||||| || |||||||| Sbjct 45826 ATCCAA-GACAAGGAAGGTATTCCTCCAGATCAACAGCGTTTAATTTTCGCTGGCAAACA 45768 Query 25145 ATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTT 25204 ||| ||||||| ||||| || |||||||| || ||||| ||||| || || || || Sbjct 45767 ATTGGAAGATGGCCGCACATTGTCTGATTACAACATACAAAAGGAATCTACTCTTCACTT 45708 Query 25205 AGTGCT 25210 || || Sbjct 45707 GGTACT 45702 Score = 96.9 bits (106), Expect = 3e-15 Identities = 131/180 (73%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 25033 CCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTGAAG-CAAAAAATCACT 25091 ||||||| | ||||| ||| | || ||||| || ||| | ||| | |||| ||| Sbjct 54434 CCATCACCTTAGAAGTCGAGCCTTCCGACACAATTGAGAATGTCAAGGCTAAAATTCAA- 54376 Query 25092 GACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAA 25151 || || ||||| || || || || ||||| || | |||||||||||||||||| | || Sbjct 54375 GATAAGGAAGGAATCCCCCCAGATCAACAACGTTTGATTTTTGCCGGCAAACAACTGGAG 54316 Query 25152 GATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 || | ||||| || ||||||||||||||| || || || || | ||||| || ||| Sbjct 54315 GACGGACGCACCTTGTCCGATTACAATATTCAGAAGGAGTCAACCTTGCATTTGGTCCTA 54256 >seq394 Length=301216 Score = 156 bits (172), Expect = 4e-33 Identities = 173/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || |||||||| |||||||| |||||| ||||||| | ||||| || | || Sbjct 217246 ATGCAGATCTTTGTAAAAACTTTGACAGGTAAAACCATCACTTTAGAAGTAGAACCCTCG 217187 Query 25059 GACACTATCGAGT-CACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || ||||| ||| | | ||||||||| ||| ||||||||||| ||||| || || || Sbjct 217186 GATACTATTGAGAACGTTAAAGCAAAAATTCAA-GACAAAGAAGGCATTCCTCCAGATCA 217128 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||||| | ||||||||||| || || | ||||||| ||||| || || || || Sbjct 217127 ACAGCGCTTAATTTTTGCCGGTAAGCAGCTGGAAGATGGCCGCACCTTGTCAGACTATAA 217068 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||| ||||| ||||| ||||| ||||| ||| || | || | ||||| Sbjct 217067 TATCCAAAAGGAATCTACGCTCCATTTGGTGTTACGTCTTCGCGGAGG 217020 Score = 111 bits (122), Expect = 1e-19 Identities = 157/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054 || |||||| || || || ||||| ||||| || ||| | ||||| | || || ||| | Sbjct 217478 AAAAATGCAGATCTTCGTGAAGACATTGACTGGCAAAACTATCACTTTAGAGGTTGAGCC 217419 Query 25055 GTCTGACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 |||||||||||| ||| | || || |||| ||| || || ||||| || || || | Sbjct 217418 GTCTGACACTATTGAGAATGTCAAGGCTAAAATTCA-AGATAAGGAAGGAATCCCGCCAG 217360 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 | || ||||| | |||||||| || || ||||| || |||| || ||| | |||| Sbjct 217359 ATCAGCAGCGTTTAATTTTTGCTGGAAAGCAATTGGAGGATGGCCGTACTCTTTCGGATT 217300 Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 | || || || ||||| || || | |||||||| ||| Sbjct 217299 ATAACATACAGAAAGAGTCAACTTTGCATTTAGTCCTA 217262 >seq180 Length=539930 Score = 132 bits (146), Expect = 4e-26 Identities = 159/213 (75%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || |||||||| || | || || || ||||||| | || || || | || Sbjct 121602 ATGCAGATTTTTGTAAAAACCCTAACGGGCAAGACCATCACTCTTGAGGTCGAACCCTCG 121543 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||||||||| | || |||| || | ||| |||||||| || |||||||| ||| Sbjct 121542 GACACTATCGAA--AATGTAAAAGCCAAGATTCAG-GACAAAGAGGGAATTCCACCCGAC 121486 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || || || | ||||| || || || ||||| ||||||| |||||| || |||||| Sbjct 121485 CAGCAACGATTGATTTTCGCTGGAAAGCAATTGGAAGATGGTCGCACATTGTCCGATTAT 121426 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTG 25208 |||||||||||||||||||| ||||| | ||| Sbjct 121425 AATATTCAAAAAGAATCCACATTACATCTTGTG 121393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433307266067690