Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq158 329 4e-85 seq787 123 3e-23 seq85 123 3e-23 >seq158 Length=613782 Score = 329 bits (364), Expect = 4e-85 Identities = 499/702 (71%), Gaps = 6/702 (1%) Strand=Plus/Plus Query 92926 ATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAG-AAGACGTA 92984 ||| || ||| ||||||| || | | |||| || | ||||| || | ||| || | Sbjct 555579 ATCGGCAACATATTCTATATATTTACACATACTTTCGCTGTTCATGCCAATTAAGTCG-A 555637 Query 92985 CAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCTA 93044 | |||| || || ||||| || ||||| || ||| |||||| ||| | | ||||| | Sbjct 555638 CTGGTAAGGCCTCTGTCAAAAACTCTTTTTCAATTTTAACGGCATCTGTTATTATTTCCA 555697 Query 93045 TTACTCTACTATTTGGT-GGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGTCG 93103 | || | |||| | |||||||||| | || || ||||||| |||||| || Sbjct 555698 AAA-TCCGTTCTTTGCTCGGTTTTTGTATCAAATGTTTAAACATTAATACCGCAAATTCA 555756 Query 93104 GTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGT 93163 || || ||||| || |||||||||| ||||| ||| ||||||||||| | | | Sbjct 555757 CAGTGCAAGCCTTCATCGCGTGATATCATTTCATTAGAGAACGTTAAACCTGGCATTATT 555816 Query 93164 CCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACG 93223 || |||||||| ||||||||||| ||||| || || ||| ||| ||||||||||| ||| Sbjct 555817 CCACGTTTCTTTAGCCAAAATATCGAAGCGAAGCTCCCACTAAAGAATATACCTTCGACG 555876 Query 93224 GCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTAC-TGCTGATCCATTTTAA 93282 || || || || | || |||||| | ||||| || |||| || | ||||| || Sbjct 555877 GCAGCGAAAGCTATAACACGTTCACCGAAATTAGCCGAATGCGATGAT-ATCCAAGCTAG 555935 Query 93283 AGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATC 93342 ||||| || || || ||||||| | || | ||| || || || |||||||| || || Sbjct 555936 TGCCCATTCCGCCTTCTTCTTAACCAATGGCATTGTCTCAATGGCATTAAATAGATATTC 555995 Query 93343 TCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGAC 93402 || | | ||||| || ||||| ||||| | | | ||||||||| || || || Sbjct 555996 CTTTTCTTTCTCATCTCTGATATATGTTTCGATAAGTAAACTATACATTTCCGAGTGTAC 556055 Query 93403 ATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTG 93462 ||| ||||| |||||||| || || || || || | ||||| || || || || ||||| Sbjct 556056 ATTTTCCATGGCAATTTGAAACCCATAAAAGCAACGTGCTTCGGTTATTTGAACCTCTTG 556115 Query 93463 AGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAA 93522 ||||||| || || | ||| ||||| || |||||||||||||| |||||||||||||| Sbjct 556116 GGAAAATCGTTCCACTAAATTCTCATTAACAATACCATCGGATGCCGCAAAAAAAGCCAA 556175 Query 93523 TATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTT 93582 | || |||||||| || ||| | | | || ||||||| | |||||| Sbjct 556176 AACGTGTGAAATAAAATGACGTTCGCCATTACTTAACCGATTCCAATCGTCGATATCTTT 556235 Query 93583 TGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGC 93624 || || || |||||||| |||||||||| || ||||| || Sbjct 556236 AGAGAGGTCAACTTCTTCTGCAGTCCAAAAAGAGGCTTCCGC 556277 Score = 91.5 bits (100), Expect = 2e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 93626 TTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGG 93685 ||||| ||||| | ||||||||| |||||||||||||||| ||||||||||| || || Sbjct 557630 TTTTTATACATCTTCCATATGTCGGGATATTGAATTGGAAAAATGACAAAACGTTTGGGA 557689 Query 93686 TTATCTTTTAGTAACGGCTCTAGTTGTGGGTCAAA 93720 || ||||| || || ||||||| |||||| || Sbjct 557690 TTTTCTTTAAGCAATGGCTCTATGGATGGGTCGAA 557724 >seq787 Length=182715 Score = 123 bits (136), Expect = 3e-23 Identities = 79/85 (93%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| |||||||||||||||||||||| |||||||||| |||||| Sbjct 63616 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 63557 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 ||||||||||||||||||||||||| Sbjct 63556 GTGGGTTCGAACCCCACACCTGACA 63532 Score = 123 bits (136), Expect = 3e-23 Identities = 79/85 (93%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| |||||||||||||||||||||| |||||||||| |||||| Sbjct 106407 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 106466 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 ||||||||||||||||||||||||| Sbjct 106467 GTGGGTTCGAACCCCACACCTGACA 106491 >seq85 Length=914259 Score = 123 bits (136), Expect = 3e-23 Identities = 79/85 (93%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| |||||||||||||||||||||| |||||||||| |||||| Sbjct 120475 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 120416 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 ||||||||||||||||||||||||| Sbjct 120415 GTGGGTTCGAACCCCACACCTGACA 120391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556833472056240