Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq394 125 6e-24 seq180 120 3e-22 seq110 114 1e-20 seq343 98.7 8e-16 >seq394 Length=301216 Score = 125 bits (138), Expect = 6e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| || ||||| ||||| |||| || |||||||| || | ||| |||||| Sbjct 217246 ATGCAGATCTTTGTAAAAACTTTGACAGGTAAAACCATCACTTTAGAAGTAGAACCCTCG 217187 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| || ||| | || ||| ||||||| |||||||||||| |||| |||||| Sbjct 217186 GATACTATTGAGAACGTTAAAGCAAAAATTCAAGACAAAGAAGGCATTCCTCCAGATCAA 217127 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || | | |||| ||| || || || |||||||| || || | || |||||| Sbjct 217126 CAGCGCTTAATTTTTGCCGGTAAGCAGCTGGAAGATGGCCGCACCTTGTCAGACTATAAT 217067 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111415 || ||||| |||||||| || ||||| ||||| ||||| ||||| |||| Sbjct 217066 ATCCAAAAGGAATCTACGCTCCATTTGGTGTTACGTCTTCGCGGAGGCA 217018 >seq180 Length=539930 Score = 120 bits (132), Expect = 3e-22 Identities = 173/243 (71%), Gaps = 1/243 (0%) Strand=Plus/Minus Query 111184 AAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCC 111243 || ||||| |||||||| ||||| | || ||||| ||||| || | || |||||| Sbjct 121605 AATATGCAGATTTTTGTAAAAACCCTAACGGGCAAGACCATCACTCTTGAGGTCGAACCC 121546 Query 111244 AGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGAT 111303 || || | | | |||||| || ||| |||||||| || |||| ||| Sbjct 121545 TCGGACACTATCGAAAATGTAAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCCGAC 121486 Query 111304 CAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 111363 || ||| | | |||| || || || |||||||||||| | || || |||||||| Sbjct 121485 CAGCAACGATTGATTTTCGCTGGAAAGCAATTGGAAGATGGTCGCACATTGTCCGATTAT 121426 Query 111364 AATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCAATAAATAA 111423 ||||| ||||||||||| ||| ||||| | ||||||||| |||| ||||| | ||| || Sbjct 121425 AATATTCAAAAAGAATCCACATTACATCTTGTGTTGCGTTTGCGAGGTGG-AGCAAAAAA 121367 Query 111424 ACG 111426 ||| Sbjct 121366 ACG 121364 >seq110 Length=875010 Score = 114 bits (126), Expect = 1e-20 Identities = 168/238 (71%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 111176 AGAGTTTAAAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAA 111235 ||| | ||||||||||||||||||| ||||| | || |||||||| ||||| ||||| Sbjct 86194 AGAATATAAAAATGCAAATTTTTGTTAAAACTCTTACTGGCAAAACTATTACTTTGGAAG 86253 Query 111236 CGGAACCCAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTC 111295 || || ||| || ||| | || || |||||| || ||||||||| ||| Sbjct 86254 TTGAGCCTTCCGACACTATTGAAAATGTCAAGGCCAAAATTCAGGATAAAGAAGGCATTC 86313 Query 111296 CCGTCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGG 111355 | ||||||||| | | |||| || || ||||||||||||||| ||| | Sbjct 86314 CTCCAGATCAACAACGTTTGATTTTCGCTGGTAAACAATTGGAAGATGGGCGGACTTTAT 86373 Query 111356 CCGATTATAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 | |||||||| |||||||| || || || | || || || | ||||| || ||||| Sbjct 86374 CGGATTATAACATACAAAAGGAGTCGACCTTGCACTTGGTACTTCGTCTCCGTGGTGG 86431 >seq343 Length=430003 Score = 98.7 bits (108), Expect = 8e-16 Identities = 166/239 (69%), Gaps = 1/239 (0%) Strand=Plus/Minus Query 111176 AGAGTTTAAAAA-TGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAA 111234 ||| |||||||| ||||||| || || ||||| | || |||||||| || || ||||| Sbjct 57715 AGATTTTAAAAAATGCAAATCTTCGTAAAAACATTAACTGGCAAAACTATCACTTTGGAA 57656 Query 111235 ACGGAACCCAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTT 111294 ||||| ||| || | | | || ||| || ||| ||||||||||| || Sbjct 57655 GTTGAACCGTCAGATACTATCGAAAATGTTAAAGCCAAGATTCAAGACAAAGAAGGTATT 57596 Query 111295 CCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATG 111354 || || || ||| | | |||| ||| ||||| ||| ||||||| || || Sbjct 57595 CCTCCAGACCAGCAACGTTTGATTTTTGCCGGCAAGCAACTGGAAGACGGACGCACCTTG 57536 Query 111355 GCCGATTATAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 ||||||||||||| || || || || || | ||||| || | |||||||||||||| Sbjct 57535 TCCGATTATAATATTCAGAAGGAGTCAACCTTGCATTTGGTCCTACGTCTGCGCGGTGG 57477 Score = 86.0 bits (94), Expect = 5e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 111214 GGCAAAACCATTACCGTGGAAACGGAACCCAGCGATTCTGTTGGCCAGGTAAAACAAAAA 111273 || |||||||| || ||||| ||||| ||| || | | | || ||| |||| Sbjct 45886 GGAAAAACCATCACTTTGGAAGTAGAACCGTCGGATACTATCGAAAACGTTAAAGCAAAA 45827 Query 111274 ATTGCCGACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAACAA 111333 || ||||| ||||| |||| |||||||| | | |||| || ||||||||| Sbjct 45826 ATCCAAGACAAGGAAGGTATTCCTCCAGATCAACAGCGTTTAATTTTCGCTGGCAAACAA 45767 Query 111334 TTGGAAGATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACATTTA 111393 ||||||||| || || | ||||| || |||||||| |||||||| || || || Sbjct 45766 TTGGAAGATGGCCGCACATTGTCTGATTACAACATACAAAAGGAATCTACTCTTCACTTG 45707 Query 111394 GTGTTGCGTCTGCGCGGTGG 111413 || ||||||| ||||| || Sbjct 45706 GTACTGCGTCTCCGCGGAGG 45687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423019758329200