Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq180 132 4e-26 seq343 127 2e-24 seq394 122 7e-23 seq110 122 7e-23 >seq180 Length=539930 Score = 132 bits (146), Expect = 4e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 114170 CAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATC 114229 ||| || | ||||| || |||||||||||||| || |||||| || || ||| ||| Sbjct 121390 CAACACAAGATGTAATGTGGATTCTTTTTGAATATTATAATCGGACAATGTGCGACCATC 121449 Query 114230 TTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTC 114289 ||| | ||| || |||||| | || | || || ||||| || ||||| || |||||||| Sbjct 121450 TTCCAATTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGGTGGAATTCCCTCTTTGTC 121509 Query 114290 GGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGT 114349 |||||| ||||| | ||| | ||||| | || |||||| || | || | || Sbjct 121510 CTGAATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGACCTCAAGAGTGATGGT 121569 Query 114350 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||||| || || |||||||||||||||||||| Sbjct 121570 CTTGCCCGTTAGGGTTTTTACAAAAATCTGCAT 121602 >seq343 Length=430003 Score = 127 bits (140), Expect = 2e-24 Identities = 169/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || || || || | ||| || ||||||| || |||||||| || ||||||||||| Sbjct 48390 ATTCCACCGCGGAGACGCAATACCAAATGTAATGTGGATTCTTTCTGTATGTTGTAATCA 48449 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || ||||| | ||||| ||||| |||| | |||||||||||| ||| Sbjct 48450 GACAACGTGCGGCCGTCTTCCAACTGTTTTCCAGCAAAGATCAAACGCTGTTGGTCTGGA 48509 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTC 114331 ||||| ||||| ||||| || ||||| |||| | | ||| | || || | ||||| Sbjct 48510 GGAATACCTTCCTTGTCTTGGAT-TTTTGCTTTAACGTTTTCGATAGTATCCGACGATTC 48568 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || |||| || | ||||| ||||||| ||| || ||||| || |||||| Sbjct 48569 TACTTCCAAAGTGATGGTTTTACCGGTCAAAGTCTTAACAAATATTTGCATG 48620 Score = 104 bits (114), Expect = 2e-17 Identities = 136/186 (73%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 114198 TGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGA 114257 || ||||||||||| || || || |||||| | |||||| |||||| | || | | Sbjct 48207 TGTATGTTGTAATCAGACAATGTGCGGCCATCTTCCAATTGTTTGCCAGCGAAAATTAAA 48266 Query 114258 CGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC-TGTTCAAC 114316 ||||||||||| |||||||| ||||| ||||| || ||||| |||| | | ||| | Sbjct 48267 CGCTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGGAT-TTTTGCTTTAACGTTTTCGAT 48325 Query 114317 GGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAAT 114376 || || | | ||| || |||| || | ||||| || |||| |||||| ||||| || Sbjct 48326 AGTATCCGACGGTTCTACTTCCAAAGTGATGGTTTTTCCAGTCAAAGTTTTAACAAATAT 48385 Query 114377 CTGCAT 114382 ||||| Sbjct 48386 TTGCAT 48391 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/202 (71%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| || || || | || || || || | |||||||| ||||| ||||||||||| Sbjct 45686 ACCTCCGCGGAGACGCAGTACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCAGA 45745 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || || || |||||| | |||||| |||||| | || | ||||||||| || ||||| Sbjct 45746 CAATGTGCGGCCATCTTCCAATTGTTTGCCAGCGAAAATTAAACGCTGTTGATCTGGAGG 45805 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTCGA 114333 ||| ||||| ||||| || ||||| |||| | | ||| | || || | | ||| | Sbjct 45806 AATACCTTCCTTGTCTTGGAT-TTTTGCTTTAACGTTTTCGATAGTATCCGACGGTTCTA 45864 Query 114334 CGTCCACGGTCACCGTTTTGCC 114355 | |||| || | ||||| || Sbjct 45865 CTTCCAAAGTGATGGTTTTTCC 45886 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || || || | | || ||||| | || || || || ||||| || |||||| Sbjct 57474 ATACCACCGCGCAGACGTAGGACCAAATGCAAGGTTGACTCCTTCTGAATATTATAATCG 57533 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || ||||| ||||| || || || | || | ||| || ||||| ||| Sbjct 57534 GACAAGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCAAAAATCAAACGTTGCTGGTCTGGA 57593 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||||||||| |||||| ||| | | ||| | || || | | ||| Sbjct 57594 GGAATACCTTCTTTGTCTTGAATCTTGGCTTTAACATTTTCGATAGTATCTGACGGTTCA 57653 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | |||||||| || | |||||||| || || ||||| Sbjct 57654 ACTTCCAAAGTGATAGTTTTGCCAGTTAATGTTTTTACGAAGATTTGCAT 57703 Score = 86.0 bits (94), Expect = 5e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| | | ||||| ||||| | || |||||||| ||||||||||| || Sbjct 48618 ATGCCACCACGCAAACGTAAAACCAAATGGAGTGTCGATTCTTTCTGAATGTTGTAGTCA 48677 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || || ||| | ||||| ||||| |||| | ||| ||||| || || Sbjct 48678 GAGAGTGTGCGGCCATTTTCCAACTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGT 48737 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTC 114331 || | || ||||| || ||| ||| |||||| | | |||| || |||| | || Sbjct 48738 GGGACACCCTCTTTATCTTGAAT-TTTAGTTTTAACATTCTCAATAGTATCGGATGGCTC 48796 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | ||||| || |||| || || || || |||||||| Sbjct 48797 AACCTCCAAGGTGATAGTTTTTCCAGTCAATGTCTTCACGAATATCTGCAT 48847 >seq394 Length=301216 Score = 122 bits (134), Expect = 7e-23 Identities = 157/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 114171 AAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCT 114230 || || ||||| | ||||||||| ||||| || || || || || || || |||| Sbjct 217035 AACACCAAATGGAGCGTAGATTCCTTTTGGATATTATAGTCTGACAAGGTGCGGCCATCT 217094 Query 114231 TCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCG 114290 || || || ||||| || | || | |||||||| || |||||||||||||||||||| Sbjct 217095 TCCAGCTGCTTACCGGCAAAAATTAAGCGCTGTTGATCTGGAGGAATGCCTTCTTTGTCT 217154 Query 114291 GCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGT 114349 ||| ||||| |||| | | |||| || || | || ||| || || | || | || Sbjct 217155 TGAAT-TTTTGCTTTAACGTTCTCAATAGTATCCGAGGGTTCTACTTCTAAAGTGATGGT 217213 Query 114350 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 ||| || |||| |||||||||||| ||||||||| Sbjct 217214 TTTACCTGTCAAAGTTTTTACAAAGATCTGCATG 217247 >seq110 Length=875010 Score = 122 bits (134), Expect = 7e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || || || | || || || ||||| ||||| ||||| Sbjct 86434 ATACCACCACGGAGACGAAGTACCAAGTGCAAGGTCGACTCCTTTTGTATGTTATAATCC 86375 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| || |||||| | ||||||||||||| | || | ||| ||||| || ||| Sbjct 86374 GATAAAGTCCGCCCATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGA 86315 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 |||||||||||||| || ||| || || | | ||||| ||||||| | || Sbjct 86314 GGAATGCCTTCTTTATCCTGAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCA 86255 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | |||||||| || |||||||| |||||||| ||||| Sbjct 86254 ACTTCCAAAGTAATAGTTTTGCCAGTAAGAGTTTTAACAAAAATTTGCAT 86205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420114297356712