Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq343 165 2e-35 seq110 120 7e-22 seq394 114 3e-20 >seq343 Length=430003 Score = 165 bits (182), Expect = 2e-35 Identities = 176/231 (76%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||||||||| | | ||| | ||| | ||| |||||| || || || || || | Sbjct 48392 TCCACCGCGGAGACGCAATACCAAATGTAATGTGGATTCTTTCTGTATGTTGTAATCAGA 48451 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT-- 288363 | |||||| |||||||| || |||||||| || ||||||| ||||||||| ||| Sbjct 48452 CAACGTGCGGCCGTCTTCCAACTGTTTTCCAGCAAAGATCAAACGCTGTTG---GTCTGG 48508 Query 288364 -GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 || || ||||| || || |||||||| ||||| |||||||| |||| ||| |||||| Sbjct 48509 AGGAATACCTTCCTTGTCTTGGATTTTTGCTTTAACGTTTTCGATAGTATCCGACGATTC 48568 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||||| | ||||| || || ||||||| |||||| || ||||| ||||| Sbjct 48569 TACTTCCAAAGTGATGGTTTTACCGGTCAAAGTCTTAACAAATATTTGCAT 48619 Score = 118 bits (130), Expect = 3e-21 Identities = 142/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||| || || || ||||| | ||| ||||| || | ||| || ||||| || || || Sbjct 48656 TTCTTTCTGAATGTTGTAGTCAGAGAGTGTGCGGCCATTTTCCAACTGTTTGCCAGCAAA 48715 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||||| ||| |||||| ||||| || |||||||| || ||||| | ||| || || Sbjct 48716 GATCAAACGTTGTTGATCTGGTGGGACACCCTCTTTATCTTGAATTTTAGTTTTAACATT 48775 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || |||| |||| | || || || | ||||| || || || |||| ||||| || Sbjct 48776 CTCAATAGTATCGGATGGCTCAACCTCCAAGGTGATAGTTTTTCCAGTCAATGTCTTCAC 48835 Query 288462 GAATATCTGCATT 288474 ||||||||||||| Sbjct 48836 GAATATCTGCATT 48848 Score = 102 bits (112), Expect = 2e-16 Identities = 162/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 |||||||| || | || || | ||| | || || || || |||||||| |||| Sbjct 57477 CCACCGCGCAGACGTAGGACCAAATGCAAGGTTGACTCCTTCTGAATATTATAATCGGAC 57536 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363 | |||||||||||||| | ||| || || || || |||| ||| || || ||| Sbjct 57537 AAGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCAAAAATCAAACGTTGCTG---GTCTGGA 57593 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || |||||||| || || || || ||||| || ||||| |||| ||| || ||| Sbjct 57594 GGAATACCTTCTTTGTCTTGAATCTTGGCTTTAACATTTTCGATAGTATCTGACGGTTCA 57653 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||||| | ||||| || || || || | || || ||||| || |||||| Sbjct 57654 ACTTCCAAAGTGATAGTTTTGCCAGTTAATGTTTTTACGAAGATTTGCATT 57704 >seq110 Length=875010 Score = 120 bits (132), Expect = 7e-22 Identities = 173/243 (71%), Gaps = 6/243 (2%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | |||||| | || | || || ||||| || ||||| || | Sbjct 86431 CCACCACGGAGACGAAGTACCAAGTGCAAGGTCGACTCCTTTTGTATGTTATAATCCGAT 86372 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || || || ||||| |||||||| || ||||| |||| ||| |||||| ||||| Sbjct 86371 AAAGTCCGCCCATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGA---TCTGGA 86315 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || |||||||||||||| ||||| || || || ||||| |||| ||| | || Sbjct 86314 GGAATGCCTTCTTTATCCTGAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCA 86255 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATGTTATTC 288483 ||||| | || || || || || || ||||| || || || || |||||| | ||||| Sbjct 86254 ACTTCCAAAGTAATAGTTTTGCCAGTAAGAGTTTTAACAAAAATTTGCATTTTTATATTC 86195 Query 288484 TAA 288486 ||| Sbjct 86194 TAA 86192 >seq394 Length=301216 Score = 114 bits (126), Expect = 3e-20 Identities = 143/195 (73%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| ||||||||||||||||| | | ||||| || ||||| | || || || || || Sbjct 217055 TTCCTTTTGGATATTATAGTCTGACAAGGTGCGGCCATCTTCCAGCTGCTTACCGGCAAA 217114 Query 288342 GATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 || | |||||||| |||| || || |||||||| || || ||||| ||||| || Sbjct 217115 AATTAAGCGCTGTTG---ATCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTGCTTTAAC 217171 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 ||| || |||| ||| | ||||||||| | ||||| || || || |||| ||| || Sbjct 217172 GTTCTCAATAGTATCCGAGGGTTCTACTTCTAAAGTGATGGTTTTACCTGTCAAAGTTTT 217231 Query 288459 GACGAATATCTGCAT 288473 || || |||||||| Sbjct 217232 TACAAAGATCTGCAT 217246 Score = 100 bits (110), Expect = 7e-16 Identities = 140/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| || || ||||| || | || || || || || || ||||| ||||| || || Sbjct 217284 TCTTTCTGTATGTTATAATCCGAAAGAGTACGGCCATCCTCCAATTGCTTTCCAGCAAAA 217343 Query 288343 ATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || | |||||| ||| ||||| ||||||||| ||||| || ||||| || || || Sbjct 217344 ATTAAACGCTGCTGA---TCTGGCGGGATTCCTTCCTTATCTTGAATTTTAGCCTTGACA 217400 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || |||| || || || || || | ||||| || || || |||| ||||| Sbjct 217401 TTCTCAATAGTGTCAGACGGCTCAACCTCTAAAGTGATAGTTTTGCCAGTCAATGTCTTC 217460 Query 288460 ACGAATATCTGCATT 288474 ||||| ||||||||| Sbjct 217461 ACGAAGATCTGCATT 217475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179595061171828