Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq394 143 3e-29 seq343 136 4e-27 seq180 113 5e-20 seq110 93.3 4e-14 seq334 84.2 2e-11 >seq394 Length=301216 Score = 143 bits (158), Expect = 3e-29 Identities = 160/211 (76%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 64234 CACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTC 64293 ||| | ||| | ||| ||||| ||||| || || || |||| | |||||| | ||||| Sbjct 217037 CACCAAATGGAGCGTAGATTCCTTTTGGATATTATAGTCTGACAAGGTGCGGCCATCTTC 217096 Query 64294 AAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTG 64353 |||||||| |||||| |||| | ||||| || || |||||||| |||||||| ||||| Sbjct 217097 CAGCTGCTTACCGGCAAAAATTAAGCGCTGTTGATCTGGAGGAATGCCTTCTTTGTCTTG 217156 Query 64354 TATTTTTTGCTTTA-CAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCT 64412 |||||| |||||| | ||| | ||||| || || ||||||| ||| | ||| | Sbjct 217157 AATTTTT-GCTTTAACGTTCTCAATAGTATCCGAGGGTTCTACTTCTAAAGTGATGGTTT 217215 Query 64413 TGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | || |||||||||||||| || || ||||| Sbjct 217216 TACCTGTCAAAGTTTTTACAAAGATCTGCAT 217246 >seq343 Length=430003 Score = 136 bits (150), Expect = 4e-27 Identities = 171/232 (74%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||||| | || || | ||| | || || || || ||||| || ||||| | Sbjct 57476 ACCACCGCGCAGACGTAGGACCAAATGCAAGGTTGACTCCTTCTGAATATTATAATCGGA 57535 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | |||||| ||||||| || |||||||||||| |||| | || |||||||| ||||| Sbjct 57536 CAAGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCAAAAATCAAACGTTGCTGGTCTGGAGG 57595 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCA 64394 ||| |||||||| ||||| | | || ||||| ||| || | ||||| | || | Sbjct 57596 AATACCTTCTTTGTCTTG-AATCTTGGCTTTAACATTTTCGATAGTATCTGACGGTTCAA 57654 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 |||| | ||| | || ||||| || || ||||||||||| ||||||||||| Sbjct 57655 CTTCCAAAGTGATAGTTTTGCCAGTTAATGTTTTTACGAAGATTTGCATTTT 57706 Score = 118 bits (130), Expect = 1e-21 Identities = 149/200 (75%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || |||||||| || ||||||||||| | | ||||| ||||||| | ||| || || Sbjct 48423 GTGGATTCTTTCTGTATGTTGTAATCAGACAACGTGCGGCCGTCTTCCAACTGTTTTCCA 48482 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || | ||||| ||||| |||||||| ||||| || ||||| | |||||||||| Sbjct 48483 GCAAAGATCAAACGCTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGGA-TTTTTGCTTT 48541 Query 64367 -ACAACCTCCACTGTATCACCGGCG--TCCACTTCTACAGTTACGGTCTTGCCGGTCAAA 64423 || || | |||| ||| || || ||||| | ||| | ||| || ||||||||| Sbjct 48542 AACGTTTTCGATAGTAT--CCGACGATTCTACTTCCAAAGTGATGGTTTTACCGGTCAAA 48599 Query 64424 GTTTTTACGAAAATTTGCAT 64443 || || || || |||||||| Sbjct 48600 GTCTTAACAAATATTTGCAT 48619 Score = 104 bits (114), Expect = 2e-17 Identities = 139/189 (74%), Gaps = 6/189 (3%) Strand=Plus/Plus Query 64259 TGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGC 64318 || ||||||||||| | | ||||| | ||||| | || ||||| || |||| | Sbjct 48207 TGTATGTTGTAATCAGACAATGTGCGGCCATCTTCCAATTGTTTGCCAGCGAAAATTAAA 48266 Query 64319 CGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCAC 64377 ||||| ||||| |||||||| ||||| || ||||| | |||||||||| || || | Sbjct 48267 CGCTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGGA-TTTTTGCTTTAACGTTTTCGAT 48325 Query 64378 TGTATCACCGGCG--TCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAA 64435 |||| ||| || || ||||| | ||| | ||| || || ||||||||||| || || Sbjct 48326 AGTAT--CCGACGGTTCTACTTCCAAAGTGATGGTTTTTCCAGTCAAAGTTTTAACAAAT 48383 Query 64436 ATTTGCATT 64444 ||||||||| Sbjct 48384 ATTTGCATT 48392 Score = 86.0 bits (94), Expect = 6e-12 Identities = 96/127 (76%), Gaps = 1/127 (1%) Strand=Plus/Plus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || ||||| ||||| ||||||||||| | | ||||| | ||||| | || Sbjct 45711 TGAAGAGTAGATTCCTTTTGTATGTTGTAATCAGACAATGTGCGGCCATCTTCCAATTGT 45770 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 ||||| || |||| | ||||| || || |||||||| ||||| || ||||| | |||| Sbjct 45771 TTGCCAGCGAAAATTAAACGCTGTTGATCTGGAGGAATACCTTCCTTGTCTTGGA-TTTT 45829 Query 64361 TGCTTTA 64367 ||||||| Sbjct 45830 TGCTTTA 45836 Score = 86.0 bits (94), Expect = 6e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||||||||| ||||||||||| || | || ||||| | | ||| | ||| ||||| Sbjct 48651 GTCGATTCTTTCTGAATGTTGTAGTCAGAGAGTGTGCGGCCATTTTCCAACTGTTTGCCA 48710 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || | || || || || || || | || ||||| ||||| ||||| || Sbjct 48711 GCAAAGATCAAACGTTGTTGATCTGGTGGGACACCCTCTTTATCTTGAATTTTAGTTTTA 48770 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | ||||| | || || || | || | || || || ||||| || Sbjct 48771 ACATTCTCAATAGTATCGGATGGCTCAACCTCCAAGGTGATAGTTTTTCCAGTCAATGTC 48830 Query 64427 TTTACGAAAATTTGCATTTTAATAA 64451 || ||||| || |||||||||| || Sbjct 48831 TTCACGAATATCTGCATTTTAAAAA 48855 >seq180 Length=539930 Score = 113 bits (124), Expect = 5e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || ||||| | | ||| ||||| | || |||||||||||||| || ||||| | Sbjct 121376 CCACCTCGCAAACGCAACACAAGATGTAATGTGGATTCTTTTTGAATATTATAATCGGAC 121435 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| | ||||| | ||||| || || |||| | || ||||||||||| ||| Sbjct 121436 AATGTGCGACCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGGTGGA 121495 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 ||||| ||||| || || || || |||||| || | || || || || || Sbjct 121496 ATTCCCTCTTTGTCCTGAATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGACC 121555 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | ||| | ||||||||| || | |||||||| ||||| ||||| || Sbjct 121556 TCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCATATT 121605 >seq110 Length=875010 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| || ||||| ||||| ||||| | | || ||| | ||||| | || || || Sbjct 86401 GTCGACTCCTTTTGTATGTTATAATCCGATAAAGTCCGCCCATCTTCCAATTGTTTACCA 86342 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || |||| | || || || || |||||||| |||||||| || || ||||| ||| Sbjct 86341 GCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCCTGAATTTTGGCCTTG 86282 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | || || | || ||||| | ||| | || ||||| || | |||| Sbjct 86281 ACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATAGTTTTGCCAGTAAGAGTT 86222 Query 64427 TTTACGAAAATTTGCATTTTAATA 64450 || || |||||||||||||| ||| Sbjct 86221 TTAACAAAAATTTGCATTTTTATA 86198 >seq334 Length=279301 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 115361 GGACTGCACGGTTTTCATGTTCACGAATTCGGCGACACTAGCAACGGCTGCACGTCCGCC 115420 ||| | || || ||||||||||||||||| || |||| || |||||||| || || ||| Sbjct 48740 GGATTACATGGCTTTCATGTTCACGAATTTGGGGACAATACTAACGGCTGTACTTCTGCC 48799 Query 115421 GGCGAGCATTTCAACCCGTTTAACCAAGATCACGGCGCACCGAACGCACCCGTCCGCCAC 115480 || | |||||| || || | || |||| || || ||||| | | | ||||| Sbjct 48800 GGTGCGCATTTTAATCCTTGCAAAAAAGAGCATGGAGCACCCACTGATGATGAGCGCCAT 48859 Query 115481 GTCGGTGATCTGGGCAACGTCGAATC 115506 |||||||| ||||||| || || || Sbjct 48860 ATCGGTGATTTGGGCAATGTTGAGTC 48885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499620279931440