Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq180 134 1e-26 seq343 132 3e-26 seq110 132 3e-26 seq394 113 3e-20 seq539 107 1e-18 seq226 87.8 1e-12 >seq180 Length=539930 Score = 134 bits (148), Expect = 1e-26 Identities = 170/232 (73%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||||||| | || || | ||| | || || |||||||| || || |||||| | Sbjct 121376 CCACCTCGCAAACGCAACACAAGATGTAATGTGGATTCTTTTTGAATATTATAATCG--G 121433 Query 15010 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | ||| || | ||||| ||||| || |||||| | ||||| || || |||||| || Sbjct 121434 ACAATGTGCGACCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGGTG 121493 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 ||||||| || ||||| ||| ||| ||||||| |||| ||||| || ||| | Sbjct 121494 GAATTCCCTCTTTGTCCTGAATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGA 121553 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 | || | || ||||| || || || || |||||||||||||| |||||||| Sbjct 121554 CCTCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCATATT 121605 >seq343 Length=430003 Score = 132 bits (146), Expect = 3e-26 Identities = 159/214 (74%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGT 15022 || || ||||| | || || ||||| |||||||||||||| || || || ||| Sbjct 48408 AATACCAAATGTAATGTGGATTCTTTCTGTATGTTGTAATCA--GACAACGTGCGGCCGT 48465 Query 15023 CTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGT 15082 |||| || ||||| ||||| | ||||||||||||||||| ||||| |||||||||| Sbjct 48466 CTTCCAACTGTTTTCCAGCAAAGATCAAACGCTGTTGGTCTGGAGGAATACCTTCCTTGT 48525 Query 15083 CACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGG 15142 | ||||| ||| || |||| |||||||| |||||| || || || |||| Sbjct 48526 CTTGGATTTTTGCTTTAACGTTTTCGATAGTATCCGACGATTCTACTTCCAAAGTGATGG 48585 Query 15143 TTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||||||| |||| ||| || ||||| |||||||| Sbjct 48586 TTTTACCGGTCAAAGTCTTAACAAATATTTGCAT 48619 Score = 129 bits (142), Expect = 4e-25 Identities = 142/187 (76%), Gaps = 4/187 (2%) Strand=Plus/Plus Query 14992 TGTATGTTGTAATCGCTGAGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCA 15049 |||||||||||||| || ||| || | ||||| ||||||||||||||| | || | Sbjct 48207 TGTATGTTGTAATCA--GACAATGTGCGGCCATCTTCCAATTGTTTGCCAGCGAAAATTA 48264 Query 15050 AACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTA 15109 ||||||||||||| ||||| ||||||||||| ||||| ||| || |||| | Sbjct 48265 AACGCTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGGATTTTTGCTTTAACGTTTTCGA 48324 Query 15110 TAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAA 15169 ||||||| |||||| || || || |||||||| || |||| |||||| ||||| | Sbjct 48325 TAGTATCCGACGGTTCTACTTCCAAAGTGATGGTTTTTCCAGTCAAAGTTTTAACAAATA 48384 Query 15170 TTTGCAT 15176 ||||||| Sbjct 48385 TTTGCAT 48391 Score = 114 bits (126), Expect = 9e-21 Identities = 137/184 (74%), Gaps = 4/184 (2%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCTT 15025 || || ||||| ||||| || ||||||||||||||||| || ||| || | |||| Sbjct 45705 ACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCA--GACAATGTGCGGCCATCTT 45762 Query 15026 CTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCAC 15085 | ||||||||||||||| | || ||||||||||| || ||||| ||||||||||| Sbjct 45763 CCAATTGTTTGCCAGCGAAAATTAAACGCTGTTGATCTGGAGGAATACCTTCCTTGTCTT 45822 Query 15086 AAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTT 15145 ||||| ||| || |||| |||||||| |||||| || || || ||||||| Sbjct 45823 GGATTTTTGCTTTAACGTTTTCGATAGTATCCGACGGTTCTACTTCCAAAGTGATGGTTT 45882 Query 15146 TACC 15149 | || Sbjct 45883 TTCC 45886 Score = 113 bits (124), Expect = 3e-20 Identities = 168/237 (71%), Gaps = 1/237 (0%) Strand=Plus/Plus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| ||||| | |||||| ||||| || || || ||||| || |||||||| || Sbjct 48619 TGCCACCACGCAAACGTAAAACCAAATGGAGTGTCGATTCTTTCTGAATGTTGTAGTCAG 48678 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 ||| | | | | ||| || ||||||||||| | |||||||| ||||| || || Sbjct 48679 AGAGTGTGCGGCCATTTTCCAACTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTG 48738 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | | || || || || |||||| |||| ||| | || ||||||||| || | Sbjct 48739 GGACACCCTCTTTATCTTGAATTTTAGTTTTAACATTCTCAATAGTATCGGATGGCTCAA 48798 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAA 15184 | || ||||| || ||||| || |||| || || || || || ||||| ||| ||| Sbjct 48799 CCTCCAAGGTGATAGTTTTTCCAGTCAATGTCTTCACGAATATCTGCAT-TTTAAAA 48854 >seq110 Length=875010 Score = 132 bits (146), Expect = 3e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || || | ||| || || ||||||||||| ||||| | | | | | | ||||| Sbjct 86413 ACCAAGTGCAAGGTCGACTCCTTTTGTATGTTATAATCCGATAAAGTCCGCCCATCTTCC 86354 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 |||||||| |||||| | |||||||| ||||| || ||||| ||||| || || | Sbjct 86353 AATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCCTGA 86294 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 |||||| || ||| |||| ||||| ||| | || || || || ||||| ||||| Sbjct 86293 ATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATAGTTTTG 86234 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15180 || || |||||||| |||||||||||||| ||| Sbjct 86233 CCAGTAAGAGTTTTAACAAAAATTTGCATTTTT 86201 >seq394 Length=301216 Score = 113 bits (124), Expect = 3e-20 Identities = 166/233 (71%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 14946 TCTGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC 15005 |||||| || || | | ||| || ||||| || ||||| || ||||| || || || || Sbjct 217016 TCTGCCTCCGCGAAGACGTAACACCAAATGGAGCGTAGATTCCTTTTGGATATTATAGTC 217075 Query 15006 GCTGAGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCG 15063 ||| || || | ||||| | || || || || | || || |||||||| || Sbjct 217076 --TGACAAGGTGCGGCCATCTTCCAGCTGCTTACCGGCAAAAATTAAGCGCTGTTGATCT 217133 Query 15064 TTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTT 15123 ||||| ||||| ||||| |||||| ||| || | || |||||||| | Sbjct 217134 GGAGGAATGCCTTCTTTGTCTTGAATTTTTGCTTTAACGTTCTCAATAGTATCCGAGGGT 217193 Query 15124 TCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||||| ||||| || |||||||||||||||| |||||||||||| || ||||| Sbjct 217194 TCTACTTCTAAAGTGATGGTTTTACCTGTCAAAGTTTTTACAAAGATCTGCAT 217246 Score = 93.3 bits (102), Expect = 3e-14 Identities = 165/240 (69%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 |||| || ||||| | || |||||||| | || || ||||| |||||||| ||||| Sbjct 217246 TGCCCCCACGCAAACGTAGGACTAAATGCAAAGTTGACTCTTTCTGTATGTTATAATCCG 217305 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 ||| | | | || || ||||| || ||||| | || |||||||| || || | Sbjct 217306 AAAGAGTACGGCCATCCTCCAATTGCTTTCCAGCAAAAATTAAACGCTGCTGATCTGGCG 217365 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | ||||||||||| || |||||| || ||| | || ||||| || || | Sbjct 217366 GGATTCCTTCCTTATCTTGAATTTTAGCCTTGACATTCTCAATAGTGTCAGACGGCTCAA 217425 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTT--GAAAT 15185 | ||||| || || ||||| || |||| || || || || || ||||| ||| ||||| Sbjct 217426 CCTCTAAAGTGATAGTTTTGCCAGTCAATGTCTTCACGAAGATCTGCATTTTTAAGAAAT 217485 >seq539 Length=405157 Score = 107 bits (118), Expect = 1e-18 Identities = 158/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 14964 TAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTC 15023 |||||| ||||| || || | | ||||||||||| || | | || | | || Sbjct 240413 TAAAACCAAATGGAGAGTCGCGCCCTTTTGTATGTTATAGTTCGTTAGCGTGCAACTATC 240472 Query 15024 TTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTC 15083 |||||| || ||||| || || ||||| || |||| | |||||| || ||||| || Sbjct 240473 TTCTAACTGCTTGCCGGCATAAATCAATCGGCGTTGATTTGGTGGAATACCGTCCTTATC 240532 Query 15084 ACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGT 15143 ||| |||||||| | |||| ||||||||| | ||| || ||||| |||| ||| Sbjct 240533 CTGAATCTTGCTTTTAATCTTTTCAATAGTATCGGTCGGTTCGACATCTAAAGTAAGGGT 240592 Query 15144 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAATAA 15187 || || || | ||||| |||||||| ||||| ||| ||| || Sbjct 240593 ATTGCCCGTTAACGTTTTCACAAAAATCTGCATTTTTCAAAAAA 240636 >seq226 Length=749477 Score = 87.8 bits (96), Expect = 1e-12 Identities = 166/242 (69%), Gaps = 12/242 (5%) Strand=Plus/Minus Query 14964 TAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTC 15023 |||||| || | ||| || || | ||||||||||| || | | || | | | Sbjct 358444 TAAAACCAACTAAAGAGTCGAGTACTTTTGTATGTTATAGCCCATTAGTGTAAAACCATG 358385 Query 15024 TTCTAATTGTTTGCCAGCGTATATCAAACG---CTG--TTGGTCGTTTGGAATTCCTTCC 15078 |||||| || ||||| || || |||||||| ||| |||| ||| || || ||| Sbjct 358384 TTCTAACTGCTTGCCCGCATAAATCAAACGGCTCTGACTTGG-----TGGTATACCGTCC 358330 Query 15079 TTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTA 15138 | || ||| ||| |||| | |||| || |||||| | ||| |||||||| || Sbjct 358329 GTATCCTGAATCTTGGTTTTAATTGTTTCAATCGTATCGGTCGGTTCGACGTCTAAAGTC 358270 Query 15139 ATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAATAA--ATTTTTTAA 15196 ||||| || || || | |||| | |||||||| ||||| ||| ||| || | |||||| Sbjct 358269 ATGGTATTGCCGGTTAAAGTTCTCACAAAAATCTGCATTTTTAAAAAAATCCTCTTTTAA 358210 Query 15197 TA 15198 || Sbjct 358209 TA 358208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357374899462910