Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq180 154 1e-32 seq343 136 4e-27 seq394 116 4e-21 >seq180 Length=539930 Score = 154 bits (170), Expect = 1e-32 Identities = 175/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 126883 TGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATC 126942 ||||||||| || || |||||||| | ||||| || || |||||||||||||| ||||| Sbjct 121372 TGCTCCACCTCGCAAACGCAACACAAGATGTAATGTGGATTCTTTTTGAATATTATAATC 121431 Query 126943 GCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGG 127002 | || |||||| ||| || | || ||||||||| | |||||||| ||||| ||||| Sbjct 121432 GGACAATGTGCGACCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGG 121491 Query 127003 AGGTATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCT 127061 || || ||||| |||||| ||| | | || || | | ||||| ||||||| | Sbjct 121492 TGGAATTCCCTCTTTGTCC-TGAATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTT 121550 Query 127062 CGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| || | || | || ||||| || || |||||||||||||||||||| Sbjct 121551 CGACCTCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCAT 121602 >seq343 Length=430003 Score = 136 bits (150), Expect = 4e-27 Identities = 171/231 (74%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||||||||| | ||||| |||||||||| || || ||||| || || |||||||| Sbjct 48392 TCCACCGCGGAGACGCAATACCAAATGTAATGTGGATTCTTTCTGTATGTTGTAATCAGA 48451 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || |||||| || || | |||||||||||| ||||||| ||||| || || ||||| Sbjct 48452 CAACGTGCGGCCGTCTTCCAACTGTTTTCCAGCAAAGATCAAACGCTGTTGGTCTGGAGG 48511 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGA--GTTGTTCGACGGTGTCCGTACTCTCG 127063 || || |||||||| |||||| ||||| | ||| ||||| || |||| || Sbjct 48512 AATACCTTCCTTGTCTTGGATTTT-TGCTTTAACGTT-TTCGATAGTATCCGACGATTCT 48569 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 ||||| | || | ||||| ||||||| ||| || ||||| || |||||| Sbjct 48570 ACTTCCAAAGTGATGGTTTTACCGGTCAAAGTCTTAACAAATATTTGCATG 48620 Score = 87.8 bits (96), Expect = 2e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| || || | |||||||| | || ||||| || ||||||||||||||| | Sbjct 54242 CCACCGCGCAAACGTAGGACCAAATGCAAGGTTGACTCCTTCTGAATATTGTAATCGGAC 54301 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || || ||||| || || | ||||| || || ||||| || || Sbjct 54302 AAGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCAAAAATCAAACGTTGTTGATCTGGGGGG 54361 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || ||||| || ||||| ||||| | || | ||||| | | ||||||| Sbjct 54362 ATTCCTTCCTTATCTTGAATTTTAGCCTTGACATTCTCAATTGTGTCGGAAGGCTCGACT 54421 Query 127067 TCGACGGT 127074 || | ||| Sbjct 54422 TCTAAGGT 54429 >seq394 Length=301216 Score = 116 bits (128), Expect = 4e-21 Identities = 166/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| | || ||||||||||| | |||||| || ||||| ||||| || || | Sbjct 217020 CCTCCGCGAAGACGTAACACCAAATGGAGCGTAGATTCCTTTTGGATATTATAGTCTGAC 217079 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || ||||| || || || | || || ||||| ||||| ||||| Sbjct 217080 AAGGTGCGGCCATCTTCCAGCTGCTTACCGGCAAAAATTAAGCGCTGTTGATCTGGAGGA 217139 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA--GTTGTTCGACGGTGTCCGTACTCTCGA 127064 ||||| || |||| | ||| ||| ||||| | ||| || | || |||| || | Sbjct 217140 ATGCCTTCTTTGT-CTTGAATTTTTGCTTTAACGTT-CTCAATAGTATCCGAGGGTTCTA 217197 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 |||| | || | ||||| || |||| |||||||||||| ||||||||| Sbjct 217198 CTTCTAAAGTGATGGTTTTACCTGTCAAAGTTTTTACAAAGATCTGCATG 217247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475477464798240