Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_011976.1 Length=43016 Score E Sequences producing significant alignments: (Bits) Value seq861 80.6 7e-11 >seq861 Length=102403 Score = 80.6 bits (88), Expect = 7e-11 Identities = 153/223 (69%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 27564 TCCAAGCATTTGCATCACACCATTAATTCCAACATTAATCTCAGTGGTGTAGCGGTCTTG 27623 ||| ||||||||||| |||||||||| || ||| ||| || || | || ||||| Sbjct 30676 TCCGAGCATTTGCATAGCACCATTAATGCCTACAATAACTTCTGTAATATACTTATCTTG 30735 Query 27624 CCCTGTCTGGTCTTGCCACTTTC-TGGTTCTCAGCATTCCCTCGAAATAAACCTGATCAC 27682 || | ||||||||||| |||| || || | ||| | || |||| ||| || ||| | Sbjct 30736 ACCATTTTGGTCTTGCCATTTTCTTGTTTGTAAGC-TCCCTTCGATATATACTTGAGATC 30794 Query 27683 CTTTTTTCACATACTGCCCTACGACTTCAGCAAGTTTCCCAACTACGGCAACACGATGCC 27742 ||||| | ||| | || | | |||||| | ||| |||| | | || | |||| Sbjct 30795 CTTTTCGTAAATATTCTCCGGCTATTTCAGCTAATTTTCCAAAAATAACTACTCTGTGCC 30854 Query 27743 ATTCAGTCTGCTCCTTTTGTTCGCCAGTCTGTTTATCTCGCCA 27785 |||| || | || || ||| || || | |||||| ||||| Sbjct 30855 ATTCGGTTTTTTCTTTGATTTCTCCGGTATTTTTATCGCGCCA 30897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137523188198136