Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq394 116 9e-21 seq110 113 1e-19 seq180 105 2e-17 >seq394 Length=301216 Score = 116 bits (128), Expect = 9e-21 Identities = 148/201 (74%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 ||||| || || |||||||||| || ||||| | ||| || | ||||||||||||||| Sbjct 217044 TGGAGCGTAGATTCCTTTTGGATATTATAGTCTGACAAGGTGCGGCCATCTTCCAGCTGC 217103 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || ||||| || || | ||||| || || ||| ||| |||||| || ||||| ||| Sbjct 217104 TTACCGGCAAAAATTAAGCGCTGTTGATCTGGAGGAATGCCTTCTTTGTCTTGAAT-TTT 217162 Query 199547 TGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 ||| || ||| || | || || | | |||||| || || ||||| || ||||| || Sbjct 217163 TGCTTTAACGTTCTCAATAGTATCCGAGGGTTCTACTTCTAAAGTGATGGTTTTACCTGT 217222 Query 199606 GAGAGTTTTCACAAAAATTTG 199626 | |||||| ||||| || || Sbjct 217223 CAAAGTTTTTACAAAGATCTG 217243 >seq110 Length=875010 Score = 113 bits (124), Expect = 1e-19 Identities = 147/203 (72%), Gaps = 3/203 (1%) Strand=Plus/Minus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 |||||||||||||| | ||| || || | ||||||| |||||||||| || || || Sbjct 86401 GTCGACTCCTTTTGTATGTTATAATCCGATAAAGTCCGCCCATCTTCCAATTGTTTACCA 86342 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552 ||||| || | ||| || || || ||| ||| |||||| |||||||| || ||| Sbjct 86341 GCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCCTGAATTTTGGCCTTG 86282 Query 199553 ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTT 199612 || ||| | ||||| | | || || ||||| || || || || || || |||||| Sbjct 86281 ACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATAGTTTTGCCAGTAAGAGTT 86222 Query 199613 TTCACAAAAATTTGGTACATTTT 199635 || ||||||||||| |||||| Sbjct 86221 TTAACAAAAATTTG---CATTTT 86202 >seq180 Length=539930 Score = 105 bits (116), Expect = 2e-17 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 199421 ACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCC 199480 ||||| || | || || || ||||| | || || || | ||| || | ||||||||| Sbjct 121394 ACAAGATGTAATGTGGATTCTTTTTGAATATTATAATCGGACAATGTGCGACCATCTTCC 121453 Query 199481 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGA 199540 | |||||||| ||||| || | || |||||||| || |||||| ||| |||||| Sbjct 121454 AATTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGGTGGAATTCCCTCTTTGTCCTGA 121513 Query 199541 ATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTA 199600 ||||| || || ||||| ||||| | | ||| || || | ||||| ||||| Sbjct 121514 ATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGACCTCAAGAGTGATGGTCTTG 121573 Query 199601 CCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || ||||| |||||||| || Sbjct 121574 CCCGTTAGGGTTTTTACAAAAATCTG 121599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178862298033042