Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq394 134 1e-26 seq343 132 3e-26 seq180 120 2e-22 seq110 100 2e-16 >seq394 Length=301216 Score = 134 bits (148), Expect = 1e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || || | ||| | |||||||| | || ||| ||||| |||||||| || | Sbjct 217019 GCCTCCGCGAAGACGTAACACCAAATGGAGCGTAGATTCCTTTTGGATATTATAGTCTGA 217078 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 ||| ||| |||| |||| || || ||| |||||||||| ||||| ||||| | || Sbjct 217079 CAAGGTGCGGCCATCTTCCAGCTGCTTACCGGCAAAAATTAAGCGCTGTTGATCTGGAGG 217138 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | |||||||||||| |||||| ||||| || | | || || | | ||| || Sbjct 217139 AATGCCTTCTTTGTCTTGAATTTTTGCTTTAACGTTCTCAATAGTATCCGAGGGTTCTAC 217198 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || ||||| || |||||||| || ||||||||||| |||||||||||| Sbjct 217199 TTCTAAAGTGATGGTTTTACCTGTCAAAGTTTTTACAAAGATCTGCATG 217247 Score = 114 bits (126), Expect = 9e-21 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || |||||||| || || ||||||||||| ||||| ||||| |||||||| | Sbjct 217247 GCCCCCACGCAAACGTAGGACTAAATGCAAAGTTGACTCTTTCTGTATGTTATAATCCGA 217306 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 | | || |||| |||||||| || || |||||||||||||||||||||| | || Sbjct 217307 AAGAGTACGGCCATCCTCCAATTGCTTTCCAGCAAAAATTAAACGCTGCTGATCTGGCGG 217366 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | ||||| || || ||||| || | || | | ||||| | || || Sbjct 217367 GATTCCTTCCTTATCTTGAATTTTAGCCTTGACATTCTCAATAGTGTCAGACGGCTCAAC 217426 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || ||||| || ||||| || || || || || |||||||||||||| Sbjct 217427 CTCTAAAGTGATAGTTTTGCCAGTCAATGTCTTCACGAAGATCTGCAT 217474 >seq343 Length=430003 Score = 132 bits (146), Expect = 3e-26 Identities = 168/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || |||| ||| || ||||||||||| || || || || ||||||||||||| | Sbjct 57477 CCACCGCGCAGACGTAGGACCAAATGCAAGGTTGACTCCTTCTGAATATTATAATCGGAC 57536 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || |||| | || |||| ||| || ||| ||||||| ||||| ||||| || | || Sbjct 57537 AAGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCAAAAATCAAACGTTGCTGGTCTGGAGGA 57596 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTA--ATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | ||||||||||| || || |||| || ||| || || |||| ||| | Sbjct 57597 ATACCTTCTTTGTCTTGAATCTTGGCTTTAACATTTTCGATA--GTATCTGACGGTTCAA 57654 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | |||||||| || ||||| || ||||| |||||||||||||| ||||| Sbjct 57655 CTTCCAAAGTGATAGTTTTGCCAGTTAATGTTTTTACGAAGATTTGCAT 57703 Score = 102 bits (112), Expect = 6e-17 Identities = 145/202 (72%), Gaps = 4/202 (2%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | |||||||||||| || | ||| ||| |||||||| || ||||| | | Sbjct 45687 CCTCCGCGGAGACGCAGTACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCAGAC 45746 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || ||| |||| ||||||||||| || | |||||||||||||| ||||| | || Sbjct 45747 AATGTGCGGCCATCTTCCAATTGTTTGCCAGCGAAAATTAAACGCTGTTGATCTGGAGGA 45806 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAA--TCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | ||||| ||||| |||||| ||||| | ||| || || || | ||| | Sbjct 45807 ATACCTTCCTTGTCTTGGATTTTTGCTTTAACGTTTTCGATA--GTATCCGACGGTTCTA 45864 Query 39671 CGTCCAAAGTAATTGTTTTACC 39692 | |||||||| || ||||| || Sbjct 45865 CTTCCAAAGTGATGGTTTTTCC 45886 Score = 93.3 bits (102), Expect = 3e-14 Identities = 134/187 (72%), Gaps = 4/187 (2%) Strand=Plus/Plus Query 39535 TGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAA 39594 ||||| || ||||| | ||| ||| |||| ||||||||||| || | ||||||||| Sbjct 48207 TGTATGTTGTAATCAGACAATGTGCGGCCATCTTCCAATTGTTTGCCAGCGAAAATTAAA 48266 Query 39595 CGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAA--TCGTCGCTA 39652 ||||| || || | || | ||||| ||||| |||||| ||||| | ||| || Sbjct 48267 CGCTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGGATTTTTGCTTTAACGTTTTCGATA 48326 Query 39653 CTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGA 39712 || || | ||| || |||||||| || ||||| || || |||||||| || || | Sbjct 48327 --GTATCCGACGGTTCTACTTCCAAAGTGATGGTTTTTCCAGTCAAAGTTTTAACAAATA 48384 Query 39713 TCTGCAT 39719 | ||||| Sbjct 48385 TTTGCAT 48391 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || |||||||| || ||||||||||| || || || || ||||| ||||||| | Sbjct 54242 CCACCGCGCAAACGTAGGACCAAATGCAAGGTTGACTCCTTCTGAATATTGTAATCGGAC 54301 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || |||| | || |||| |||||| ||| ||||||| ||||| || ||||| | ||| Sbjct 54302 AAGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCAAAAATCAAACGTTGTTGATCTGGGGGG 54361 Query 39613 ACGCCTTCTTTGTC 39626 | ||||| || || Sbjct 54362 ATTCCTTCCTTATC 54375 >seq180 Length=539930 Score = 120 bits (132), Expect = 2e-22 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || ||||||||||||| || | ||| || ||| ||||||||| ||||||||||||| | Sbjct 121376 CCACCTCGCAAACGCAACACAAGATGTAATGTGGATTCTTTTTGAATATTATAATCGGAC 121435 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || ||| |||| |||||||| || || | ||||| || || ||||| || | || Sbjct 121436 AATGTGCGACCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGGTGGA 121495 Query 39613 ACGCCTTCTTTGTC--GCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | || |||||||| | || || | || || ||| || ||||| | | ||| | Sbjct 121496 ATTCCCTCTTTGTCCTGAATCTTGGCTTTTACATTTTCGATA--GTGTCCGAGGGTTCGA 121553 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || | ||| || || || ||||||| |||||||| || |||||||| Sbjct 121554 CCTCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCAT 121602 >seq110 Length=875010 Score = 100 bits (110), Expect = 2e-16 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| |||||||| ||||| || || |||||||| |||||||| | Sbjct 86431 CCACCACGGAGACGAAGTACCAAGTGCAAGGTCGACTCCTTTTGTATGTTATAATCCGAT 86372 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 ||| || |||| ||||||||||| || | ||||| ||||| || ||||| | || Sbjct 86371 AAAGTCCGCCCATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGGA 86312 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTG--TTTA-ATCGTCGCTACTGTGTCTGCGCTTTCC 39669 | ||||||||| || | | |||| | || | || || || ||||| | || Sbjct 86311 ATGCCTTCTTTATC-CTGAATTTTGGCCTTGACATTTTCAATA--GTGTCGGAAGGCTCA 86255 Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || ||||||||||| ||||| || || | |||||| || || || ||||| Sbjct 86254 ACTTCCAAAGTAATAGTTTTGCCAGTAAGAGTTTTAACAAAAATTTGCAT 86205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347352979015958