Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq158 163 3e-35 seq394 118 1e-21 seq180 113 5e-20 seq343 111 2e-19 >seq158 Length=613782 Score = 163 bits (180), Expect = 3e-35 Identities = 379/571 (66%), Gaps = 8/571 (1%) Strand=Plus/Plus Query 132861 GCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTC 132920 |||||| ||| | |||||| || ||||| || ||||| || || |||||||| || Sbjct 555711 GCTCGGTTTTTGTATCAAATGTTTAAACATTAATACCGCAAATTCACAGTGCAAGCCTTC 555770 Query 132921 GTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAG 132980 || | || || | ||| || ||| || || || ||||| | || ||||| || || Sbjct 555771 ATCGCGTGATATCATTTCATTAGAGAACGTTAAACCTGGCATTATTCCACGTTTCTTTAG 555830 Query 132981 CCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCAC 133040 ||||||||| | ||||| || || |||||| | || |||||||| |||||||| | Sbjct 555831 CCAAAATATCGAAGCGAAGCTCCCACTAAAGAATATACCTTCGACGGCAGCGAAAGCTAT 555890 Query 133041 CAGGCGCTCGCCGAACGTGGC----TTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGG 133096 | || || ||||| | || | | || | ||||| || |||||||| | Sbjct 555891 AACACGTTCACCGAAATTAGCCGAATGCGATGAT----ATCCAAGCTAGTGCCCATTCCG 555946 Query 133097 CCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCG 133156 |||| | || || | ||||| || || ||||| || || | | || |||| | Sbjct 555947 CCTTCTTCTTAACCAATGGCATTGTCTCAATGGCATTAAATAGATATTCCTTTTCTTTCT 556006 Query 133157 AGGAACGCACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGG 133216 | | || || ||||| || |||||||||||||||||| || ||||||| Sbjct 556007 CATCTCTGATATATGTTTCGATAAGTAAACTATACATTTCCGAGTGTACATTTTCCATGG 556066 Query 133217 CGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCT 133276 | |||||||| || |||||||| || || ||| | || || ||||| | || || | Sbjct 556067 CAATTTGAAACCCATAAAAGCAACGTGCTTCGGTTATTTGAACCTCTTGGGAAAATCGTT 556126 Query 133277 CGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGA 133336 | || | ||| || || || || || ||| || || ||||| |||| ||||| | Sbjct 556127 CCACTAAATTCTCATTAACAATACCATCGGATGCCGCAAAAAAAGCCAAAACGTGTGAAA 556186 Query 133337 TGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCA 133396 | ||||| || ||| | | || || | ||| ||| | || || || ||||| | Sbjct 556187 TAAAATGACGTTCGCCATTACTTAACCGATTCCAATCGTCGATATCTTTAGAGAGGTCAA 556246 Query 133397 CCTCCTCGACGGTCCAAAACGACGCCTCGGC 133427 | || || | |||||||| || || || || Sbjct 556247 CTTCTTCTGCAGTCCAAAAAGAGGCTTCCGC 556277 >seq394 Length=301216 Score = 118 bits (130), Expect = 1e-21 Identities = 158/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || |||||||| | || || ||||||||||| | || || || || | Sbjct 217246 ATGCAGATCTTTGTAAAAACTTTGACAGGTAAAACCATCACTTTAGAAGTAGAACCCTCG 217187 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | |||| |||||| |||||| | |||||||| || ||||| | || || Sbjct 217186 GATACTATTGAGAACG-TTAAAGCAAAAATTCAAGACAAAGAAGGCATTCCTCCAGATCA 217128 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| | |||| || || || |||||||| || | |||||| | ||||| || Sbjct 217127 ACAGCGCTTAATTTTTGCCGGTAAGCAGCTGGAAGATGGCCGCACCTTGTCAGACTATAA 217068 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||||||| | ||||| ||||||||| | ||| Sbjct 217067 TATCCAAAAGGAATCTACGCTCCATTTGGTGTTACGT 217031 >seq180 Length=539930 Score = 113 bits (124), Expect = 5e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 38241 aaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || || |||||||| || |||||||| |||||||| | || ||||| || Sbjct 121605 AATATGCAGATTTTTGTAAAAACCCTAACGGGCAAGACCATCACTCTTGAGGTCGAACCC 121546 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | ||| | |||| || || | ||||||||||||||||| ||||| Sbjct 121545 TCGGACACTATCGAAAATGTAAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCCGAC 121486 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || || || | |||| ||| || || || |||| || | ||||| | ||| || Sbjct 121485 CAGCAACGATTGATTTTCGCTGGAAAGCAATTGGAAGATGGTCGCACATTGTCCGATTAT 121426 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || || ||||| ||| | || | ||| | ||| |||||||| |||| || Sbjct 121425 AATATTCAAAAAGAATCCACATTACATCTTGTGTTGCGTTTGCGAGGTGG 121376 >seq343 Length=430003 Score = 111 bits (122), Expect = 2e-19 Identities = 166/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 38235 TTTaaaaaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTC 38294 ||| ||||||||||||| ||||||||||| | || |||||||| ||||| | || || Sbjct 57712 TTTTAAAAAATGCAAATCTTCGTAAAAACATTAACTGGCAAAACTATCACTTTGGAAGTT 57653 Query 38295 GAGGCCACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCC 38354 || | | || | | ||| |||||| || || | |||||||| || ||||| Sbjct 57652 GAACCGTCAGATACTATCGAAAATGTTAAAGCCAAGATTCAAGACAAAGAAGGTATTCCT 57593 Query 38355 GCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAAC 38414 | ||||| || || | |||| || ||||| || ||||| |||| |||||| | | Sbjct 57592 CCAGACCAGCAACGTTTGATTTTTGCCGGCAAGCAACTGGAAGACGGACGCACCTTGTCC 57533 Query 38415 GACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || || || || || ||||| | || |||||||||| || ||| || | || || Sbjct 57532 GATTATAATATTCAGAAGGAGTCAACCTTGCATTTGGTCCTACGTCTGCGCGGTGG 57477 Score = 102 bits (112), Expect = 8e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 38241 aaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 |||||||| |||||||| || || | || || ||||| |||||| | || || ||| | Sbjct 48850 AAAATGCAGATATTCGTGAAGACATTGACTGGAAAAACTATCACCTTGGAGGTTGAGCCA 48791 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 |||| | | | | ||||| ||||| | || |||||||| | || | || Sbjct 48790 TCCGATACTATTGAGAATGTTAAAACTAAAATTCAAGATAAAGAGGGTGTCCCACCAGAT 48731 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 ||||| || | || | || ||||||||| |||| | | ||||| ||| |||||| Sbjct 48730 CAACAACGTTTGATCTTTGCTGGCAAACAGTTGGAAAATGGCCGCACACTCTCTGACTAC 48671 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| || || ||| |||| || |||||||| | |||||| | || ||| Sbjct 48670 AACATTCAGAAAGAATCGACACTCCATTTGGTTTTACGTTTGCGTGGTGGC 48620 Score = 100 bits (110), Expect = 3e-16 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||||||||| || || || | || || ||||||||||| | || || || | | Sbjct 48619 ATGCAAATATTTGTTAAGACTTTGACCGGTAAAACCATCACTTTGGAAGTAGAATCGTCG 48560 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | ||||| |||||| |||||||| ||||| || || ||||| | ||||| Sbjct 48559 GATACTATCGAAAACG-TTAAAGCAAAAATCCAAGACAAGGAAGGTATTCCTCCAGACCA 48501 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| | || | || || |||||| |||| |||| ||||| | || ||||| Sbjct 48500 ACAGCGTTTGATCTTTGCTGGAAAACAGTTGGAAGACGGCCGCACGTTGTCTGATTACAA 48441 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||| || || ||| | || | |||||||| ||||| Sbjct 48440 CATACAGAAAGAATCCACATTACATTTGGTATTGCGT 48404 Score = 96.9 bits (106), Expect = 3e-15 Identities = 135/187 (72%), Gaps = 2/187 (1%) Strand=Plus/Minus Query 38243 aaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||||||||| || ||||| | || || ||||||||||| | || || || | | Sbjct 48392 AATGCAAATATTTGTTAAAACTTTGACTGGAAAAACCATCACTTTGGAAGTAGAACCGTC 48333 Query 38303 CGACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 || | | | ||||| |||||| |||||||| ||||| || || ||||| | |||| Sbjct 48332 GGATACTATCGAAAACG-TTAAAGCAAAAATCCAAGACAAGGAAGGTATTCCTCCAGACC 48274 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 ||||||| | |||| ||| |||||||| |||| || | ||||| | || |||| Sbjct 48273 AACAGCGTTTAATTTTCGCTGGCAAACAATTGGAAGATGGCCGCACATTGTCTGATTACA 48214 Query 38422 ACATCCA 38428 |||| || Sbjct 48213 ACATACA 48207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500148254019840