Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq362 104 3e-17 seq961 100 4e-16 >seq362 Length=381446 Score = 104 bits (114), Expect = 3e-17 Identities = 346/534 (65%), Gaps = 7/534 (1%) Strand=Plus/Plus Query 112297 CTCAAACCGAGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTA 112356 ||||| ||||| || || || || |||||||||||||| || ||||| | || |||| Sbjct 8412 CTCAAGTAGAGACCGGGACTCCTTACATGCTTTACAAAGATGCTTGTAATCGTAAAAGTA 8471 Query 112357 ATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTA 112416 ||||| ||||| | || || || | ||| | |||||||||||| | |||| || Sbjct 8472 ATCAACAGAATGTTGGCACTATAAAATGCAGTAACTTGTGTACAGAAATCGTCGAATATA 8531 Query 112417 CAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGG 112476 || || || | || || || || || || ||||| || | | || ||| Sbjct 8532 CATCAGCTGAAGAAATAGCAGTTTGCAATCTAGCCTCAATTGCGTTGAATATGTTCGTG- 8590 Query 112477 ATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAA 112536 ||| ||| ||| | || ||||| | | |||||| | |||||| | || | | |||| Sbjct 8591 -ACCACAGATAAACA-ATATGATTTTCACAAACTCAAAGAAGTTGCCAAGCTTATAACAA 8648 Query 112537 AAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTA 112596 |||||| |||| | || ||| |||| || || | | | | || |||| Sbjct 8649 GAAACCTCAACAAGATAATCGATGTCAATTACTATCCGCTGTCGGAAACCAGAAAGTCTA 8708 Query 112597 ATATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTT 112656 || | | || |||||||||||| | ||||||||||| | || || | | | ||| | Sbjct 8709 ATTTTCGTCATCGTCCAATTGGTTTAGGTGTCCAAGGATTTGCTGACGCACTAATTTTAA 8768 Query 112657 GTCGCCACGCATTTGATTCCGACGAAGCGAAGGA--AATCAATGCGCGTATATTTGAGAC 112714 || | | | ||| ||| ||| | | | | ||| | || ||||| || Sbjct 8769 TGCGTTATCCCTATGAAAGCGA--AAGTGCTGCACGCTTAAATAAACAAATTTTTGAAAC 8826 Query 112715 AATGTATCACGCCGCTCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGA 112774 ||| ||| | | || | || || |||| || ||||| | | ||||| || || Sbjct 8827 AATATATTATGGTGCCTTAGAAGCTAGTTGTGAATTGGCCAAACAGTACGGTCCGTACGA 8886 Query 112775 AACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGA 112828 ||||| ||| ||| ||||| | |||| | ||||||| |||||||||||| Sbjct 8887 AACCTATGAAGGTAGTCCAGTTAGTAAAGGTATCCTTCAATATGATATGTGGGA 8940 >seq961 Length=34630 Score = 100 bits (110), Expect = 4e-16 Identities = 345/534 (65%), Gaps = 7/534 (1%) Strand=Plus/Minus Query 112297 CTCAAACCGAGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTA 112356 ||||| ||||| || || || || |||||||||||||| || ||||| | || |||| Sbjct 4322 CTCAAGTAGAGACCGGGACTCCTTACATGCTTTACAAAGATGCTTGTAATCGTAAAAGTA 4263 Query 112357 ATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTA 112416 ||||| ||||| | || || || | ||| | ||||||||||| | |||| || Sbjct 4262 ATCAACAGAATGTTGGCACTATAAAATGCAGTAACTTGTGTACAGAAATAGTCGAATATA 4203 Query 112417 CAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGG 112476 || || || | || || || || || || ||||| || | | || ||| Sbjct 4202 CATCAGCTGAAGAAATAGCAGTTTGCAATCTAGCCTCAATTGCGTTGAATATGTTCGTG- 4144 Query 112477 ATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAA 112536 ||| ||| ||| | || ||||| | | |||||| | |||||| | || | | |||| Sbjct 4143 -ACCACAGATAAACA-ATATGATTTTCACAAACTCAAAGAAGTTGCCAAGCTTATAACAA 4086 Query 112537 AAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTA 112596 |||||| |||| | || ||| |||| || || | | | | || |||| Sbjct 4085 GAAACCTCAACAAGATAATCGATGTCAATTACTATCCGCTGTCGGAAACCAGAAAGTCTA 4026 Query 112597 ATATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTT 112656 || | | || |||||||||||| | ||||||||||| | || || | | | ||| | Sbjct 4025 ATTTTCGTCATCGTCCAATTGGTTTAGGTGTCCAAGGATTTGCTGACGCACTAATTTTAA 3966 Query 112657 GTCGCCACGCATTTGATTCCGACGAAGCGAAGGA--AATCAATGCGCGTATATTTGAGAC 112714 || | | | ||| ||| ||| | | | | ||| | || ||||| || Sbjct 3965 TGCGTTATCCCTATGAAAGCGA--AAGTGCTGCACGCTTAAATAAACAAATTTTTGAAAC 3908 Query 112715 AATGTATCACGCCGCTCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGA 112774 ||| ||| | | || | || || |||| || ||||| | | ||||| || || Sbjct 3907 AATATATTATGGTGCCTTAGAAGCTAGTTGTGAATTGGCCAAACAGTACGGTCCGTACGA 3848 Query 112775 AACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGA 112828 ||||| ||| ||| ||||| | |||| | ||||||| |||||||||||| Sbjct 3847 AACCTATGAAGGTAGTCCAGTTAGTAAAGGTATCCTTCAATATGATATGTGGGA 3794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620711937066720