Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq227 104 3e-17 >seq227 Length=351182 Score = 104 bits (114), Expect = 3e-17 Identities = 342/517 (66%), Gaps = 16/517 (3%) Strand=Plus/Plus Query 159271 TGTGATATCACAGGGTTTGATTCTATATCATTACAACCTAACGCAGGATCACAGGGTGAG 159330 ||||| |||||||| | |||| ||||| || ||||| || | || | || || || Sbjct 19510 TGTGAAATCACAGGTTATGATAAAATATCGTTTCAACCCAATTCTGGTGCTCAAGGCGAA 19569 Query 159331 TATGCAGGACTGTTAGCAATCCA-AGCATACCATCAAGGATCAGGA-GATGATAAAAGAA 159388 ||||| || || || || | ||| ||||| | || ||| | || | | ||| Sbjct 19570 TATGCGGGCCTACGGGCCATACGCAGC-TACCA-CGAGCATCGTAAAGAAGGGCACCGAA 19627 Query 159389 ATGTATGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCATCAGCAGTGATGGCAG 159448 |||| ||| | || || || |||||||| || |||||||| || || ||||| | Sbjct 19628 ATGTTTGTCTAATTCCCATTTCTGCACATGGTACAAATCCTGCTTCTGCTCAAATGGCCG 19687 Query 159449 GGATGAAAGTTGTAGGTGTCAAGTGTGATGA-TGATGGCAACATAGACATCAAAGATCTA 159507 | |||||||||| | | || || | | |||||| | ||||||||| | |||| Sbjct 19688 GCATGAAAGTTGAACCTATCC-GTATACTTTCTGATGGAAGCATAGACATGGCACATCTG 19746 Query 159508 GAGAAGAAAGCAATCATGAATA--CATTTGAACTGTCATGTATTATGATTACATATCCAT 159565 | |||||| || |||| | || | | || || ||| | ||| ||||||| || | Sbjct 19747 CGCGATAAAGCA-TC-TGAACATGCAAGTAATCTTTCTTGTGTAATGGTTACATACCCTT 19804 Query 159566 CTACACATGGTGTATTTGAA---ACAAACATCAGACAGATATGTAAGATTGTTCATGAGA 159622 | || || || || ||| |||| | | |||| | || | || | ||| Sbjct 19805 CAACTATGGGCGTTTTCGAAGAGACAATTA-CGGACA--TTTGCGACCTTATACATCGCC 19861 Query 159623 ATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACAGGTAGGTCTAGCAAAAC 159682 |||| || || || ||||| ||||| || ||| | || ||||| || ||| || | Sbjct 19862 ATGGAGGCCAAGTGTATCTGGATGGCGCCAATATGAACGCACAAGTGGGTTTATGTCGTC 19921 Query 159683 CATGTGACTATGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCAC 159742 | | || ||||| || || | |||| |||| || ||||||||||| || ||||| | Sbjct 19922 CTGGCGATTATGGAAGTGACGTTTCTCATTTAAATTTGCATAAGACATTTTGCATTCCTC 19981 Query 159743 ATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGT 159779 | || || || || || ||| | || |||||||| || Sbjct 19982 ACGGCGGCGGCGGCCCGGGCATGGGACCTATTGGAGT 20018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588022341387360