Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_015293.1 Length=30651 Score E Sequences producing significant alignments: (Bits) Value seq861 147 4e-31 >seq861 Length=102403 Score = 147 bits (162), Expect = 4e-31 Identities = 192/266 (72%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 2001 ACAACAATTTCAGTGGTGTACTTTTCTTGACCTTGTTGGTCAGTCCATTTGCGGGTTTTT 2060 |||| || ||| || | ||||| |||||||| | |||||| |||||| | |||| | Sbjct 30707 ACAATAACTTCTGTAATATACTTATCTTGACCATTTTGGTCTTGCCATTTTCTTGTTTGT 30766 Query 2061 AACTTGCCTTCAATGTATAGCTTACTACCCTTACGTACATACTCGCCGATTATTTCAGCT 2120 || | ||||| || |||| | | || || |||| ||| || ||| |||||||||| Sbjct 30767 AAGCTCCCTTCGATATATACTTGAGATCCTTTTCGTAAATATTCTCCGGCTATTTCAGCT 30826 Query 2121 AACTTTCCAAAAACAACAATTCTGTGCCACTCGGTTTCTTCTTTTGGCTCGCCAGTGCTT 2180 || |||||||||| ||| | ||||||||| ||||||| |||||| || || || || Sbjct 30827 AATTTTCCAAAAATAACTACTCTGTGCCATTCGGTTTTTTCTTTGATTTCTCCGGTATTT 30886 Query 2181 TTATCCTTCCATTTTTCGCTAGTTGCTAGAGTTAGGTTTGCCACTGCATTTCCGTTAGGT 2240 ||||| ||| |||| ||||| || || | |||| || ||| |||| ||||| Sbjct 30887 TTATCGCGCCAACTTTCAGATGTTGCAAGCGTGATATTTGTAACGGCACTTCCATTAGGA 30946 Query 2241 ATGTAACGAATTTCTGGATCTTGACC 2266 ||||| || | ||||||| ||| || Sbjct 30947 ATGTAGCGTACATCTGGATTTTGCCC 30972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97957032907756