Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq394 158 3e-33 seq110 143 6e-29 seq180 132 1e-25 seq343 129 1e-24 >seq394 Length=301216 Score = 158 bits (174), Expect = 3e-33 Identities = 159/204 (78%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCTG 194996 || || || || || ||||| ||||| || || | |||| || | |||||||| ||||| Sbjct 217044 TGGAGCGTAGATTCCTTTTGGATATTATAGTCTGACAAG-GTGCGGCCATCTTCCAGCTG 217102 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| || || || | || ||||| |||||||||||||||||||||||||||||||| Sbjct 217103 CTTACCGGCAAAAATTAAGCGCTGTTGATCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 217162 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 | || ||||||||||| || ||||| ||| ||||| | || | || || ||||| Sbjct 217163 TGCTTTAACGTTCTCAATAGTATCCGAGGGTTCTACTTCTAAAGTGATGGTTTTACCTGT 217222 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 |||||||||||| || | ||||| Sbjct 217223 CAAAGTTTTTACAAAGATCTGCAT 217246 Score = 109 bits (120), Expect = 1e-18 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 194943 AGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACC 195002 ||| |||||||| || || || ||||| | |||||| | ||||| || | ||||| || Sbjct 217277 AGTTGACTCTTTCTGTATGTTATAATCCGAAAGAGTACGGCCATCCTCCAATTGCTTTCC 217336 Query 195003 TGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTT 195062 || || || | || || || ||||| || || ||||| || ||||||||||| ||| Sbjct 217337 AGCAAAAATTAAACGCTGCTGATCTGGCGGGATTCCTTCCTTATCTTGAATTTTAGCCTT 217396 Query 195063 GACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGT 195122 ||| |||||||| ||||| || || || || | || | || || || ||||| || Sbjct 217397 GACATTCTCAATAGTGTCAGACGGCTCAACCTCTAAAGTGATAGTTTTGCCAGTCAATGT 217456 Query 195123 TTTTACGAACACTTGCATTT 195142 || ||||| | ||||||| Sbjct 217457 CTTCACGAAGATCTGCATTT 217476 >seq110 Length=875010 Score = 143 bits (158), Expect = 6e-29 Identities = 151/199 (76%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 || ||||| ||||| || || ||||| | | ||| | ||||||||| | || ||||| Sbjct 86401 GTCGACTCCTTTTGTATGTTATAATCCGATAAAGTCCGCCCATCTTCCAATTGTTTACCA 86342 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 ||||| || | |||||||| |||||||||||||||||||| || |||||||| |||| Sbjct 86341 GCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCCTGAATTTTGGCCTTG 86282 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 || || ||||| ||||| ||| || ||||| | |||| || || || || | |||| Sbjct 86281 ACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATAGTTTTGCCAGTAAGAGTT 86222 Query 195124 TTTACGAACACTTGCATTT 195142 || || || | |||||||| Sbjct 86221 TTAACAAAAATTTGCATTT 86203 >seq180 Length=539930 Score = 132 bits (146), Expect = 1e-25 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 ||| ||||| || | ||||| |||||||||||||| ||||||| | || | ||||| Sbjct 121390 CAACACAAGATGTAATGTGGATTCTTTTTGAATATTATAATCGGACAATGTGCGACCATC 121449 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 ||| | ||||| || ||||| || | |||||| ||||| || ||||| || |||||||| Sbjct 121450 TTCCAATTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGGTGGAATTCCCTCTTTGTC 121509 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 ||||| || || || || || || |||||||| ||| || ||||| || | || Sbjct 121510 CTGAATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGACCTCAAGAGTGATGGT 121569 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| || || | |||||||| || | ||||| Sbjct 121570 CTTGCCCGTTAGGGTTTTTACAAAAATCTGCAT 121602 >seq343 Length=430003 Score = 129 bits (142), Expect = 1e-24 Identities = 150/200 (75%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCTGCTTACC 195002 || ||||| || |||||||| ||||||| |||| || | || ||||| || ||||| || Sbjct 57507 GTTGACTCCTTCTGAATATTATAATCGGACAAG-GTGCGTCCGTCTTCCAGTTGCTTGCC 57565 Query 195003 TGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTT 195062 || || || | ||||| |||||||||||||| ||||||||||||||||| || || Sbjct 57566 GGCAAAAATCAAACGTTGCTGGTCTGGAGGAATACCTTCTTTGTCTTGAATCTTGGCTTT 57625 Query 195063 GACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGT 195122 || || || || || || || ||| ||||| | || | || || || || || || Sbjct 57626 AACATTTTCGATAGTATCTGACGGTTCAACTTCCAAAGTGATAGTTTTGCCAGTTAATGT 57685 Query 195123 TTTTACGAACACTTGCATTT 195142 ||||||||| | |||||||| Sbjct 57686 TTTTACGAAGATTTGCATTT 57705 Score = 122 bits (134), Expect = 2e-22 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 ||||| ||||| || || |||||||| | | || | || ||||| | ||| || || Sbjct 48423 GTGGATTCTTTCTGTATGTTGTAATCAGACAACGTGCGGCCGTCTTCCAACTGTTTTCCA 48482 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 || ||||| | || ||||||||||||||||| ||||| |||||||| |||||| || Sbjct 48483 GCAAAGATCAAACGCTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGGATTTTTGCTTTA 48542 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 ||||| || || || ||||| ||| ||||| | || | || || || |||||||| Sbjct 48543 ACGTTTTCGATAGTATCCGACGATTCTACTTCCAAAGTGATGGTTTTACCGGTCAAAGTC 48602 Query 195124 TTTACGAACACTTGCAT 195140 || || || | |||||| Sbjct 48603 TTAACAAATATTTGCAT 48619 Score = 120 bits (132), Expect = 7e-22 Identities = 138/186 (74%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 194956 TGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGT 195015 || || |||||||| | | || | |||||||| | || || || ||||| || | Sbjct 48207 TGTATGTTGTAATCAGACAATGTGCGGCCATCTTCCAATTGTTTGCCAGCGAAAATTAAA 48266 Query 195016 CGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATG 195075 || ||||||||||||||||| ||||| |||||||| |||||| || ||||| || || Sbjct 48267 CGCTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGGATTTTTGCTTTAACGTTTTCGATA 48326 Query 195076 GTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACT 195135 || ||||| ||| ||||| | || | || ||||| ||||||||||| || || | | Sbjct 48327 GTATCCGACGGTTCTACTTCCAAAGTGATGGTTTTTCCAGTCAAAGTTTTAACAAATATT 48386 Query 195136 TGCATT 195141 |||||| Sbjct 48387 TGCATT 48392 Score = 109 bits (120), Expect = 1e-18 Identities = 121/159 (76%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCTGCTTACC 195002 || ||||| || |||||||||||||||| |||| || | || || || || || || || Sbjct 54272 GTTGACTCCTTCTGAATATTGTAATCGGACAAG-GTGCGTCCGTCCTCCAGTTGTTTGCC 54330 Query 195003 TGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTT 195062 || || || | |||||||| ||||| || || ||||| || ||||||||||| ||| Sbjct 54331 GGCAAAAATCAAACGTTGTTGATCTGGGGGGATTCCTTCCTTATCTTGAATTTTAGCCTT 54390 Query 195063 GACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 ||| |||||||| ||||| ||| || ||||| | ||| Sbjct 54391 GACATTCTCAATTGTGTCGGAAGGCTCGACTTCTAAGGT 54429 Score = 107 bits (118), Expect = 4e-18 Identities = 130/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||||||||| || || ||||| || |||||||| | | || | |||||||| | || Sbjct 45710 GTGAAGAGTAGATTCCTTTTGTATGTTGTAATCAGACAATGTGCGGCCATCTTCCAATTG 45769 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || || ||||| || | || ||||| ||||||||||| ||||| |||||||| ||||| Sbjct 45770 TTTGCCAGCGAAAATTAAACGCTGTTGATCTGGAGGAATACCTTCCTTGTCTTGGATTTT 45829 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCC 195113 | || ||||| || || || ||||| ||| ||||| | || | || ||||| Sbjct 45830 TGCTTTAACGTTTTCGATAGTATCCGACGGTTCTACTTCCAAAGTGATGGTTTTTCC 45886 Score = 107 bits (118), Expect = 4e-18 Identities = 152/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 194929 AAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCT 194988 ||||| | || || || || ||||| ||||| ||||| || | || || | |||| | Sbjct 48636 AAAACCAAATGGAGTGTCGATTCTTTCTGAATGTTGTAGTCAGAGAGTGTGCGGCCATTT 48695 Query 194989 TCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCT 195048 || | ||| || || || ||||| | |||||||| ||||| || | || ||||| ||| Sbjct 48696 TCCAACTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGGGACACCCTCTTTATCT 48755 Query 195049 TGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTC 195108 |||||||| || || |||||||| || || || || || || | ||| | || Sbjct 48756 TGAATTTTAGTTTTAACATTCTCAATAGTATCGGATGGCTCAACCTCCAAGGTGATAGTT 48815 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 ||||| ||||| || || ||||| | ||||||| Sbjct 48816 TTTCCAGTCAATGTCTTCACGAATATCTGCATTT 48849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109425790995242