Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq343 98.7 6e-16 seq394 96.9 2e-15 seq180 87.8 1e-12 >seq343 Length=430003 Score = 98.7 bits (108), Expect = 6e-16 Identities = 153/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 34770 AAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCA 34829 |||||||| || | ||| ||||||||||||||| ||||| || || | || ||| Sbjct 48636 AAAACCAAATGGAGTGTCGATTCTTTCTGAATGTTGTAGTCAGAGAGTGTGCGGCCATTT 48695 Query 34830 TCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34889 |||| |||||| || ||||| || | ||||| || ||| | || || ||||| || || Sbjct 48696 TCCAACTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGGGACACCCTCTTTATCT 48755 Query 34890 CTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGG 34947 ||| || ||| || || || || | || | |||||| || | ||| || | Sbjct 48756 TGAATTTTAGTTTTAAC--ATTCTCAATAGTATCGGATGGCTCAACCTCCAAGGTGATAG 48813 Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 ||||||| || | |||||||| || |||||||| || Sbjct 48814 TTTTTCCAGTCAATGTCTTCACGAATATCTGCATTTT 48850 >seq394 Length=301216 Score = 96.9 bits (106), Expect = 2e-15 Identities = 140/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| |||||||| |||||||| | || |||| |||| || ||||| ||||| Sbjct 217284 TCTTTCTGTATGTTATAATCCGAAAGAGTACGGCCATCCTCCAATTGCTTTCCAGCAAAA 217343 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 |||| || ||||| ||| |||| | || ||||| || ||| || ||||| || Sbjct 217344 ATTAAACGCTGCTGATCTGGCGGGATTCCTTCCTTATCTTGAATTTTAGCCTTGAC--AT 217401 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | ||| | |||||| || | || || ||||| || || | ||||||| Sbjct 217402 TCTCAATAGTGTCAGACGGCTCAACCTCTAAAGTGATAGTTTTGCCAGTCAATGTCTTCA 217461 Query 34969 CAAAGATCTGCATATT 34984 | ||||||||||| || Sbjct 217462 CGAAGATCTGCATTTT 217477 >seq180 Length=539930 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 34754 TCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGA 34813 ||| || | ||| | ||| || | || | |||| |||||| ||||| ||||| || || Sbjct 121375 TCCACCTCGCAAACGCAACACAAGATGTAATGTGGATTCTTTTTGAATATTATAATCGGA 121434 Query 34814 AAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGG 34873 | | || |||| |||| || ||||| || || || | |||||||||||| | || Sbjct 121435 CAATGTGCGACCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGGTGG 121494 Query 34874 CACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAAC 34933 | ||||| ||||| |||||| ||| || | | || | || || || || Sbjct 121495 AATTCCCTCTTTGTCCTGAATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGAC 121554 Query 34934 ATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 || | || ||||| || ||||| || || || ||||| ||||||||||| Sbjct 121555 CTCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCATATT 121605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324618066890928