Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq158 295 8e-75 seq832 104 3e-17 seq4 93.3 5e-14 seq296 91.5 2e-13 >seq158 Length=613782 Score = 295 bits (326), Expect = 8e-75 Identities = 478/688 (69%), Gaps = 0/688 (0%) Strand=Plus/Plus Query 37010 ATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTTTATACCAATTAGTTTTAC 37069 ||| |||||| ||||||| ||||||||||| ||| ||| || ||||||| | || Sbjct 555579 ATCGGCAACATATTCTATATATTTACACATACTTTCGCTGTTCATGCCAATTAAGTCGAC 555638 Query 37070 TGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTACAGCATCTTTAACTATATTAAC 37129 ||| | || ||| | ||| |||||| ||| | || |||||| | | ||| | | Sbjct 555639 TGGTAAGGCCTCTGTCAAAAACTCTTTTTCAATTTTAACGGCATCTGTTATTATTTCCAA 555698 Query 37130 AATAACTTCTTCAGTTGGGGGATATTTTAAATATTTAAACAATAAACATGCAAAATCACA 37189 ||| ||||| | || | | | |||| |||||||| ||| ||||| ||||| Sbjct 555699 AATCCGTTCTTTGCTCGGTTTTTGTATCAAATGTTTAAACATTAATACCGCAAATTCACA 555758 Query 37190 ATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACC 37249 || || |||||||| | ||||| ||||||||| || ||||| |||||||||| || Sbjct 555759 GTGCAAGCCTTCATCGCGTGATATCATTTCATTAGAGAACGTTAAACCTGGCATTATTCC 555818 Query 37250 TCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGC 37309 | ||| || | ||||||||| | || || ||| |||||| |||||||| || || Sbjct 555819 ACGTTTCTTTAGCCAAAATATCGAAGCGAAGCTCCCACTAAAGAATATACCTTCGACGGC 555878 Query 37310 TGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAGAAATCCAtttttttGT 37369 || || |||| || |||| ||||||| | | || || ||||| | || Sbjct 555879 AGCGAAAGCTATAACACGTTCACCGAAATTAGCCGAATGCGATGATATCCAAGCTAGTGC 555938 Query 37370 CCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTTTTAAGAGAAAGttttt 37429 ||| || ||||| ||||| || ||||| ||||| || || || ||| | | || Sbjct 555939 CCATTCCGCCTTCTTCTTAACCAATGGCATTGTCTCAATGGCATTAAATAGATATTCCTT 555998 Query 37430 ttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATT 37489 ||||| |||| | ||||| || || || ||||||||||||||||| ||||| | ||| Sbjct 555999 TTCTTTCTCATCTCTGATATATGTTTCGATAAGTAAACTATACATTTCCGAGTGTACATT 556058 Query 37490 TTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGAACATCGTTAAA 37549 ||| || || || ||||| |||||||| || | ||||| | || |||||| || | | Sbjct 556059 TTCCATGGCAATTTGAAACCCATAAAAGCAACGTGCTTCGGTTATTTGAACCTCTTGGGA 556118 Query 37550 AAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAAC 37609 ||| | | |||| || |||||||| || ||||| || ||||| ||||| | ||| Sbjct 556119 AAATCGTTCCACTAAATTCTCATTAACAATACCATCGGATGCCGCAAAAAAAGCCAAAAC 556178 Query 37610 ATATTTTATAAAATGTCTTTCATCATTTGATAATTTTTTCCAATCATTAATATCTTTTGA 37669 | | |||||||| | ||| |||| ||| |||||||| | |||||||| || Sbjct 556179 GTGTGAAATAAAATGACGTTCGCCATTACTTAACCGATTCCAATCGTCGATATCTTTAGA 556238 Query 37670 TAAATCAACTTCATCAACGGTCCAAAAA 37697 | |||||||| || | ||||||||| Sbjct 556239 GAGGTCAACTTCTTCTGCAGTCCAAAAA 556266 >seq832 Length=79107 Score = 104 bits (114), Expect = 3e-17 Identities = 84/102 (82%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 153287 AGGTGTTTTACATACAAAATTTTGGATAGTTGATAATAAACATGTATATATAGGAAGTGC 153346 ||| || |||||||||||||| ||| | || |||||||| ||| | ||| | |||||||| Sbjct 62456 AGGAGTCTTACATACAAAATTATGGGTTGTAGATAATAAGCATTTTTATCTGGGAAGTGC 62515 Query 153347 TAATATGGATTGGAGATCACTAACTCAAGTAAAAGAATTAGG 153388 ||||||||||||||||| | || ||||| ||||| ||||| Sbjct 62516 GAATATGGATTGGAGATCTTTGACCCAAGTTAAAGAGTTAGG 62557 >seq4 Length=3302515 Score = 93.3 bits (102), Expect = 5e-14 Identities = 77/94 (82%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 153287 AGGTGTTTTACATACAAAATTTTGGATAGTTGATAATAAACATGTATATATAGGAAGTGC 153346 ||| || |||||||||||||| ||| | || |||||||| ||| | ||| | |||||||| Sbjct 275485 AGGAGTCTTACATACAAAATTATGGGTTGTAGATAATAAGCATTTTTATCTGGGAAGTGC 275426 Query 153347 TAATATGGATTGGAGATCACTAACTCAAGTAAAA 153380 ||||||||||||||||| | || ||||| ||| Sbjct 275425 GAATATGGATTGGAGATCTTTGACCCAAGTCAAA 275392 >seq296 Length=768854 Score = 91.5 bits (100), Expect = 2e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 153287 AGGTGTTTTACATACAAAATTTTGGATAGTTGATAATAAACATGTATATATAGGAAGTGC 153346 ||| || |||||||||||||| ||| | || |||||||| ||| | ||| | |||||||| Sbjct 715623 AGGAGTCTTACATACAAAATTATGGGTTGTAGATAATAAGCATTTTTATCTGGGAAGTGC 715564 Query 153347 TAATATGGATTGGAGATCACTAACTCAAGTAAAAGAAT 153384 ||||||||||||||||| | || ||| ||||||| Sbjct 715563 GAATATGGATTGGAGATCTTTGACCTAAGGCAAAGAAT 715526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592287732053040