Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq394 181 8e-41 seq180 168 5e-37 seq343 163 2e-35 seq110 152 4e-32 seq539 104 2e-17 seq226 96.9 3e-15 >seq394 Length=301216 Score = 181 bits (200), Expect = 8e-41 Identities = 177/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | | |||||| || ||||| || |||||||| ||||| ||||| || || | Sbjct 217020 CCTCCGCGAAGACGTAACACCAAATGGAGCGTAGATTCCTTTTGGATATTATAGTCTGAC 217079 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | |||| |||| |||||||| ||||| || || ||||||||||| || ||| Sbjct 217080 AAGGTGCGGCCATCTTCCAGCTGCTTACCGGCAAAAATTAAGCGCTGTTGATCTGGAGGA 217139 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||||||||| |||||||||||| ||| || | || | ||| || || | ||| ||| Sbjct 217140 ATGCCTTCTTTGTCTTGAATTTTTGCTTTAACGTTCTCAATAGTATCCGAGGGTTCTACT 217199 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || | ||||| ||||| || || |||||||||||||| ||||||||| Sbjct 217200 TCTAAAGTGATGGTTTTACCTGTCAAAGTTTTTACAAAGATCTGCATG 217247 Score = 163 bits (180), Expect = 2e-35 Identities = 167/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 101252 AAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTG 101311 ||||||| |||||||| | || || ||||| ||||| || ||||| | | ||| | | Sbjct 217257 AAACGTAGGACTAAATGCAAAGTTGACTCTTTCTGTATGTTATAATCCGAAAGAGTACGG 217316 Query 101312 GCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCT 101371 |||| ||||||||||| || ||||| || |||||||| ||||| ||||| || ||||| Sbjct 217317 CCATCCTCCAATTGCTTTCCAGCAAAAATTAAACGCTGCTGATCTGGCGGGATTCCTTCC 217376 Query 101372 TTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTG 101431 |||||||||||||| || ||| | || | ||||||||||| || || || | |||| Sbjct 217377 TTATCTTGAATTTTAGCCTTGACATTCTCAATAGTGTCAGACGGCTCAACCTCTAAAGTG 217436 Query 101432 ACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | |||||||| || || || || || || |||||||| Sbjct 217437 ATAGTTTTGCCAGTCAATGTCTTCACGAAGATCTGCAT 217474 >seq180 Length=539930 Score = 168 bits (186), Expect = 5e-37 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 101242 TCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGC 101301 ||| |||| ||||| || || | ||| | || ||||||||||| ||||| ||||||| Sbjct 121375 TCCACCTCGCAAACGCAACACAAGATGTAATGTGGATTCTTTTTGAATATTATAATCGGA 121434 Query 101302 GATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGG 101361 | || | |||| ||||||||||| || || || ||||| || || || ||||| || Sbjct 121435 CAATGTGCGACCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGGTGG 121494 Query 101362 AATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCAC 101421 ||| || ||||| || ||||| || ||||||| |||| | |||||| || | ||| || Sbjct 121495 AATTCCCTCTTTGTCCTGAATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGAC 121554 Query 101422 TTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||||||| || ||||| |||| ||||||||||| |||||||| Sbjct 121555 CTCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCAT 121602 >seq343 Length=430003 Score = 163 bits (180), Expect = 2e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||| || | | ||| || || ||||| | || |||||||| ||||| |||||||| | Sbjct 48391 TTCCACCGCGGAGACGCAATACCAAATGTAATGTGGATTCTTTCTGTATGTTGTAATCAG 48450 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | || | | | || ||||| || || || ||||| |||||||||||||| || || | Sbjct 48451 ACAACGTGCGGCCGTCTTCCAACTGTTTTCCAGCAAAGATCAAACGCTGTTGGTCTGGAG 48510 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 |||| ||||| || ||||| |||||| ||| || |||| | ||| || |||| ||| | Sbjct 48511 GAATACCTTCCTTGTCTTGGATTTTTGCTTTAACGTTTTCGATAGTATCCGACGATTCTA 48570 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 |||| | ||||| ||||| ||||| ||||| || |||||||| |||||| Sbjct 48571 CTTCCAAAGTGATGGTTTTACCGGTCAAAGTCTTAACAAATATTTGCATG 48620 Score = 141 bits (156), Expect = 7e-29 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 101252 AAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTG 101311 ||||||||||| ||||| || || |||||||| || || ||||| || | || || | | Sbjct 48630 AAACGTAAAACCAAATGGAGTGTCGATTCTTTCTGAATGTTGTAGTCAGAGAGTGTGCGG 48689 Query 101312 GCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCT 101371 ||| ||||| || || || ||||| |||||||| |||||||| || || | || ||| Sbjct 48690 CCATTTTCCAACTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGGGACACCCTCT 48749 Query 101372 TTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTG 101431 |||||||||||||| ||| ||| | || | ||| || || | || || || | ||| Sbjct 48750 TTATCTTGAATTTTAGTTTTAACATTCTCAATAGTATCGGATGGCTCAACCTCCAAGGTG 48809 Query 101432 ACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | ||||| || || || || || || ||||||||||| Sbjct 48810 ATAGTTTTTCCAGTCAATGTCTTCACGAATATCTGCAT 48847 Score = 140 bits (154), Expect = 3e-28 Identities = 151/200 (76%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | | ||| | || || ||||| |||||||| |||||||| |||||||| | Sbjct 45687 CCTCCGCGGAGACGCAGTACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCAGAC 45746 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | |||| |||||||| || || || || || |||||||||||||| || ||| Sbjct 45747 AATGTGCGGCCATCTTCCAATTGTTTGCCAGCGAAAATTAAACGCTGTTGATCTGGAGGA 45806 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| || ||||| |||||| ||| || |||| | ||| || |||| ||| ||| Sbjct 45807 ATACCTTCCTTGTCTTGGATTTTTGCTTTAACGTTTTCGATAGTATCCGACGGTTCTACT 45866 Query 101423 TCAAGAGTGACCGTTTTGCC 101442 || | ||||| ||||| || Sbjct 45867 TCCAAAGTGATGGTTTTTCC 45886 Score = 140 bits (154), Expect = 3e-28 Identities = 142/185 (77%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 101285 TGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAA 101344 ||||| |||||||| | | || | | |||| |||||||| || || || || || ||| Sbjct 48207 TGTATGTTGTAATCAGACAATGTGCGGCCATCTTCCAATTGTTTGCCAGCGAAAATTAAA 48266 Query 101345 CGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACA 101404 |||||||| || || ||||| ||||| || ||||| |||||| ||| || |||| | | Sbjct 48267 CGCTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGGATTTTTGCTTTAACGTTTTCGATA 48326 Query 101405 GTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATC 101464 || || |||| ||| ||||| | ||||| ||||| || || |||||||| |||||||| Sbjct 48327 GTATCCGACGGTTCTACTTCCAAAGTGATGGTTTTTCCAGTCAAAGTTTTAACAAATATT 48386 Query 101465 TGCAT 101469 ||||| Sbjct 48387 TGCAT 48391 Score = 105 bits (116), Expect = 5e-18 Identities = 132/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 101252 AAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTG 101311 ||||||| || ||||| | ||| || || || || ||||||||||||| | || | Sbjct 54251 AAACGTAGGACCAAATGCAAGGTTGACTCCTTCTGAATATTGTAATCGGACAAGGTGCGT 54310 Query 101312 GCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCT 101371 | || |||| ||| || || ||||| |||||||| |||||||| || || || ||||| Sbjct 54311 CCGTCCTCCAGTTGTTTGCCGGCAAAAATCAAACGTTGTTGATCTGGGGGGATTCCTTCC 54370 Query 101372 TTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTG 101431 |||||||||||||| || ||| | || | ||||| || | || ||||| | ||| Sbjct 54371 TTATCTTGAATTTTAGCCTTGACATTCTCAATTGTGTCGGAAGGCTCGACTTCTAAGGTG 54430 Query 101432 A 101432 | Sbjct 54431 A 54431 >seq110 Length=875010 Score = 152 bits (168), Expect = 4e-32 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || || | ||| || || |||||||| || ||||| | | ||| | |||| ||| Sbjct 86413 ACCAAGTGCAAGGTCGACTCCTTTTGTATGTTATAATCCGATAAAGTCCGCCCATCTTCC 86354 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 ||||| ||||| || || |||||||| |||||||| || ||||||||||||||||| ||| Sbjct 86353 AATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCCTGA 86294 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 ||||| || ||| |||| | |||||| || | || ||||| | ||| | |||||| Sbjct 86293 ATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATAGTTTTG 86234 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | |||||| ||||| || ||||| Sbjct 86233 CCAGTAAGAGTTTTAACAAAAATTTGCAT 86205 >seq539 Length=405157 Score = 104 bits (114), Expect = 2e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 101238 CATTTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAAT 101297 |||| || || |||||||||||| ||||| || || | | |||||||| || || | Sbjct 240394 CATTACCGCCAAGTAAACGTAAAACCAAATGGAGAGTCGCGCCCTTTTGTATGTTATAGT 240453 Query 101298 CGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGG 101357 | | || | ||| || || ||||| || ||| | ||||| || |||||| | Sbjct 240454 TCGTTAGCGTGCAACTATCTTCTAACTGCTTGCCGGCATAAATCAATCGGCGTTGATTTG 240513 Query 101358 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTT 101417 | ||||| || || ||||| ||||| || ||| | |||| | ||| || | || || Sbjct 240514 GTGGAATACCGTCCTTATCCTGAATCTTGCTTTTAATCTTTTCAATAGTATCGGTCGGTT 240573 Query 101418 CCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | || || | ||| | || ||||| ||||| ||||| ||||| |||||||| Sbjct 240574 CGACATCTAAAGTAAGGGTATTGCCCGTTAACGTTTTCACAAAAATCTGCAT 240625 >seq226 Length=749477 Score = 96.9 bits (106), Expect = 3e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 101252 AAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTG 101311 ||||| |||| | ||||| |||| | ||| | ||||| || |||| || ||| | | Sbjct 358677 AAACGCAAAATCACCTGAAGAGTAGCGTTTTTCTCAATATTATATTCGGAGAGAGTACGG 358618 Query 101312 GCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCT 101371 |||| ||||||||||| | |||||||||| | ||| ||||| | ||||| |||||| Sbjct 358617 TCATCTTCCAATTGCTTGTCATCAAATATCAAGCACTGATGATCTAGAGGAATACCTTCT 358558 Query 101372 TTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGA 101412 || |||| ||||||| || | | || || |||||||| Sbjct 358557 TTTTCTTCAATTTTTGCCTTGATATATTTAACGGTGTCAGA 358517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396259438821582